Query= MSMg01no397_k04.b1 MSMg01no397_k04.b1 CHROMAT_FILE:
MSMg01no397_k04.b1 PHD_FILE: MSMg01no397_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:08 2005
(518 letters)
>mm_chr1_140599244_140600161
Length = 918
Score = 932 bits (482), Expect = 0.0
Identities = 506/514 (98%)
Strand = Plus / Minus
Query: 5 gaattcacttatcatcgccccatcaacttctttttgcggaagctgcctctgcgctagtgc 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaattcacttatcatcggtccatcaacttctttttgcggaagctgcctctgcgctagtgc 509
Query: 65 tcttcagggcccctctggaaagaataatactatgggtttaggagaaaacttttcttgact 124
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 508 tcttcaggacccctctggaaagaataatgctatgggtttaggagaaaacttttcttgact 449
Query: 125 attttccgctacagacatgaacttttctggccccctacctctttcccatgcctcttctgt 184
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttttccactacagacatgaacttttctggccccctacctctttcccatgcctcttctgt 389
Query: 185 cttcactccttgaaaaatatttttagactttgatggtagcctctgagcgagcagaggtga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttcactccttgaaaaatatttttagactttgatggtagcctctgagcgagcagaggtga 329
Query: 245 cagcatgtctccagcctgccttcctaaacctggagcccttagccatgttttagaaggaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagcatgtctccagcctgccttcctaaacctggagcccttagccatgttttagaaggaaa 269
Query: 305 ccattcaaatagaataaaggagcaagcacacctcaaagattcccaataataatttaaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccattcaaatagaataaaggagcaagcacacctcaaagattcccaataataatttaaaca 209
Query: 365 gagtacagacatataaaagtgttcaaatataaatatacaggtaaatgaatttttgtagag 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 208 gagtacagacatataaaagtgttcaaatataaatatacaggtcaatgaatttttgtagag 149
Query: 425 caaataatagccttgtgactagatcaagaaatgtaatcttgccagggtattacagttttg 484
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 148 caaataatagccttgtgactagatcaagaaatgtaatcttgccagggtgttacagttttg 89
Query: 485 ttgagagaaaaagagagaaaaggagaaggtgtgg 518
||||||||||||||||||||||||||||||||||
Sbjct: 88 ttgagagaaaaagagagaaaaggagaaggtgtgg 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_k04.g1 MSMg01no397_k04.g1 CHROMAT_FILE:
MSMg01no397_k04.g1 PHD_FILE: MSMg01no397_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:08 2005
(463 letters)
>mm_chr1_140420998_140421860
Length = 863
Score = 818 bits (423), Expect = 0.0
Identities = 453/467 (97%), Gaps = 8/467 (1%)
Strand = Plus / Plus
Query: 1 agtctctgctcaagagagcattaagtctcaggcaataccaataaaagaatcacaatggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctctgctcaagagagcattaagtctcaggcaataccaataaaagaatcacaatggga 260
Query: 61 ttgtattactacatgctacagaaggactgcaccccataaaattaaatgtgttatgtccga 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ttgtattactacatgctacagaaggactgcaccccatgaaattaaatgtgttatgtccga 320
Query: 121 agaacttttacagaaaagcacctttgaggtcaaaggaaaaggcttaaggaagtggtgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacttttacagaaaagcacctttgaggtcaaaggaaaaggcttaaggaagtggtgtgt 380
Query: 181 cagtgaagagctcaaggataaagagacagaaacttgaccgggaatgaagaagggcatcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgaagagctcaaggataaagagacagaaacttgaccgggaatgaagaagggcatcca 440
Query: 241 gggcagaagataatgcacacatgaaagagaccaaggacaaaacactaagagacagtcaag 300
|||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 441 gggcagaagaaaatgcacacacgaaagagaccaaggacaaaacactaagag----tcaag 496
Query: 301 gaacggacgg----tccttgtgcagagcattcggggaaagcagattctaccccagacatt 356
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaacggacggacggtccttgtgcagagcattcggggaaagcagattctaccccagacatt 556
Query: 357 tactaagtgaccaccctaggtcaggcaccgctctaggatatggtcggtgaccatgcccac 416
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 557 tactaagtgaccaccctaggtcaggcaccgctctaggatatggacggtgaccatgcagac 616
Query: 417 tgagattcctcccctgggaagctcatctccctaaccacacaggctac 463
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgagattcctcccctgggaagctcatctccctaaccacacaggctac 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
