TTCTCATGTCACTAAANGANTCANANAGCGNAACGATCCGCGGAAATCTT
TGTTTACCTCTACACCCCATTTTTAATAGGGTTATTTGGTTTTTCTGCAG
TCCAACTTCTTGAGTTCTCTGTATATATTGGATATTAGCCCTCTATTTTT
GATTGGTAAACAACCTTTCCCAATCTGTTGGTTGTCTTTTAGTATTATTG
ACATTTTCTTTTGCCTTACAGAAGCTTTGCAATCATGAAGTCCTATTTGT
CAATTCTTGATCTTACACACAAGCCATTTGTGATCTGTTCATGAAAAACT
ATTCTCATCAATTTTATAACCTCTGGTGGAATCACCATCCCTGACCTCAA
GCGATACTAAAGATCAATTCTGATAAAAACTGCATGGTACTGGTACATTG
CCAGATAGGTAGGTCAATGGAATAGAATTGAAGACCCAGAAATGAATCCA
TATACCTATTATCACTTGCTCTTTGACACGGGAGCTAAAACCATTGAGTG
GAAGAACACAGCATTTTCAACAAATGGTGCTGGCTCAACTGGTGGTTAGC
ATATAGAAGAATGTAAATTGATCCATTCGTATCTTCTTGTACAAAGGTTA
AGTCTAAGTGGATCAAGGAACTCACTCCACATAAAAGCAGAGACACTGAT
TCTTATAAAGGAAAAATNGAGGATAGCCTTCAAGATATGGGCCCAGGGTT
TCCCCCATCCATTATCTCCATGTACAGGGTCCAAGCCCAAGGGATCAGGA
ACTCCTN

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAATGG
GATTATTTGATTTTCTGGAGTTCACCTTCTTGAGTTCTTTATATTGTCTA
GAATTATATACATATTGCCTTTTTTATTTCTGCTGGGCCTTAGAAAGAAG
TCATGAATCTATGAGCCTCTAGAGGTCTACCTACATTATCTCCAAGATAA
ATACACACTGTCTAGAAAATCATAAATATATACTGGATGTATTTAATTGA
ATACATTAATGTAATGTCTGTGATTTGATTGCATTCTTGTTCAAATTGAT
GTTTTTAAAGGGTTACTAAAAGGTTGGTAATTCTCTGACTCATAATTGAA
AACTCTTTTTTTCTAACACAAAATTACAACATTTTTGTATATTTAAAAGA
AAACAAATTAAAGATCATTATTATTAGTCATATATATTGATGCAGCAGGC
TAGATGTTATATATGAAGCTTATTGCGCCTTTTAAAAACATATAAACTAA
TATTCCTTTTTAAAATTTGACCCCCGTTTTTTTGATTAAATCCCTTTTTT
TTGAATCCCGGTGAAGGGGGGTGGGGTAAACCTGCCGTCCTTCCCTTTTT
TTTTTTTTATCCTCCCGCGCCCCCTTCCGTTTTATTTCTCTCCATACCCT
TCCTCCTTTTTTTTTTTCTTTCCTCCCCGCCTTTCCACCATTTTTCCTTC
CCTCCTCTCTTATTTCTCCTTCG

Query= MSMg01no397_m15.g1 MSMg01no397_m15.g1 CHROMAT_FILE:
MSMg01no397_m15.g1 PHD_FILE: MSMg01no397_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:20 2005
         (425 letters)



>mm_chr1_111916941_111917763
          Length = 823

 Score =  756 bits (391), Expect = 0.0
 Identities = 416/425 (97%), Gaps = 2/425 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgagccccattttttaatgggattatttgattttctggagttcacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagccccattttttaatgggattatttgattttctggagttcacctt 260

                                                                       
Query: 61  cttgagttctttatattgtctagaattatatacatattgccttttttatttctgctgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatattgtctagaattatatacatattgccttttttatttctgctgggc 320

                                                                       
Query: 121 cttagaaagaagtcatgaatctatgagcctctagaggtctacctacattatctccaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagaaagaagtcatgaatctatgagcctctagaggtctacctacattatctccaagat 380

                                                                       
Query: 181 aaatacacactgtctagaaaatcataaatatatactggatgtatttaattgaatacatta 240
           ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 381 aaatacacactgtctagaaaatcataaatctatactggacgtatttaattgaatacatta 440

                                                                       
Query: 241 atgtaatgtctgtgatttgattgcattcttgttcaaattgatgtttttaaagggttacta 300
           ||||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||
Sbjct: 441 atgtaatgtctgtgatttgattgcattcttgttcaaaatgatgttataaaaggattacta 500

                                                                       
Query: 301 aaaggttggtaattctctgactcataattgaaaactctttttttctaacacaaaattaca 360
           |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||
Sbjct: 501 aaaggttggtaattctctgagtcataattgaaaactcttttttt--aacacaaaattaca 558

                                                                       
Query: 361 acatttttgtatatttaaaagaaaacaaattaaagatcattattattagtcatatatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acatttttgtatatttaaaagaaaacaaattaaagatcattattattagtcatatatatt 618

                
Query: 421 gatgc 425
           |||||
Sbjct: 619 gatgc 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 823
Length adjustment: 9
Effective length of query: 416
Effective length of database: 814
Effective search space:   338624
Effective search space used:   338624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)