Query= MSMg01no397_m20.b1 MSMg01no397_m20.b1 CHROMAT_FILE:
MSMg01no397_m20.b1 PHD_FILE: MSMg01no397_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:21 2005
(439 letters)
>mm_chr1_172197851_172198690
Length = 840
Score = 828 bits (428), Expect = 0.0
Identities = 437/440 (99%), Gaps = 1/440 (0%)
Strand = Plus / Minus
Query: 1 ttgatagaagaataaccatgattgagaacattccttggtttgggcaagttttgcatttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttgatagaagaataaccatgattgagaacattccttggtttgggcaagttttgcatttcc 581
Query: 61 cagtctaatagaatcttttgattggttctttctcattcatttataataacatacccagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cagtctaatagaatcttttgattggttctttctcattcatttataataacatacccagac 521
Query: 121 aatcagagcttgcctaagtctacacacaggatttggtatggcatttttaggtgtccagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aatcagagcttgcctaagtctacacacaggatttggtatggcatttttaggtgtccagta 461
Query: 181 ctctgacactggaaggaagacagctctccccttgaagatgcggtggacacagatccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctctgacactggaaggaagacagctctccccttgaagatgcggtggacacagatccttcc 401
Query: 241 aagactcctct-tctctgcaggcagaggaagtcatccctgccctttgagactttgtgctt 299
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aagactccactctcactgcaggcagaggaagtcatccctgccctttgagactttgtgctt 341
Query: 300 ctgccattcttgtctgagacctgccctctgcagacctagagagggctgttctcagttgct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgccattcttgtctgagacctgccctctgcagacctagagagggctgttctcagttgct 281
Query: 360 ctcaggaggtccactgagagagagctcagagcagggatataggctttcagcctcttgctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctcaggaggtccactgagagagagctcagagcagggatataggctttcagcctcttgctt 221
Query: 420 tgcatcctgatgtgactcaa 439
||||||||||||||||||||
Sbjct: 220 tgcatcctgatgtgactcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space: 357330
Effective search space used: 357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_m20.g1 MSMg01no397_m20.g1 CHROMAT_FILE:
MSMg01no397_m20.g1 PHD_FILE: MSMg01no397_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:21 2005
(383 letters)
>mm_chr1_172000915_172001697
Length = 783
Score = 717 bits (371), Expect = 0.0
Identities = 380/383 (99%)
Strand = Plus / Plus
Query: 1 tcactgcaatgtaattagcaaataaaaatcacctctgtgcagcgccctgcagtcgttgac 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tcactgcaatgtaattagcaaataaaaatcacctctgtgtagcgccctgcagtcgttgac 260
Query: 61 ctttagactagtaagtagtagaagcagagcttaaactctaacctatatttatatgttata 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttagactagtaagtagcagaagcagagcttaaactctaacctatatttatatgttata 320
Query: 121 tattaaagcctatattataaattatgtgttcataagaactgataacttatggaaacatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaaagcctatattataaattatgtgttcataagaactgataacttatggaaacatca 380
Query: 181 cagaagttcctcaaaaaactaaaaccagaactaccacatgattgagctatctatccctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaagttcctcaaaaaactaaaaccagaactaccacatgattgagctatctatccctct 440
Query: 241 actgggtacctatactaagaaaacaaaacttaaaaaaggaaaccagtgtgttcagacact 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgggtacctatacaaagaaaacaaaacttaaaaaaggaaaccagtgtgttcagacact 500
Query: 301 atacaccctccaatggattgcaccccaaaggctaagaaatggagccccaatgtccactga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacaccctccaatggattgcaccccaaaggctaagaaatggagccccaatgtccactga 560
Query: 361 tgaaaagatggataaagaaaatg 383
|||||||||||||||||||||||
Sbjct: 561 tgaaaagatggataaagaaaatg 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
