BAC Information

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BAC

Clone NameMSMg01-397N24
Chromosome1 (Build37)
Map Location 19,470,734 - 19,471,149
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397N24.T7 (MSMg01no397_n24.b1)MSMg01-397N24.TJ (MSMg01no397_n24.g1)
ACCAG498112AG498113
length812782
length of high quality
(start - end)		278 (43 - 320)389 (73 - 461)
definitionCHROMAT_FILE: MSMg01no397_n24.b1 PHD_FILE: MSMg01no397_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:27 2005CHROMAT_FILE: MSMg01no397_n24.g1 PHD_FILE: MSMg01no397_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAAATCCGCGGAAT
TCTATGCTNATGCTCTGTACCCCAATTTTTAATAGGGTTATTTGATTTTC
TGGAGACTACCTTTTGAGTTTTTTATATATATTGGGTATTTGTTCCCTGT
CTGATTTAGGATTGGTAAAGATCCCTGCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTTGATCTTACAGCACCAGCCATTGTGGTTATGT
TCAGAAATTTTTACTCTGTGTTTTTATCTTGGAGGTTTTCCCCCACTTTC
TCTTCTATAAGTTTTACCGTCTATGGTTTTACATGGAGCTCCTTGACCCC
CTTATACTTGAGCCCCCCCCCACCCACCTTATATTGTATTTTCTCCGTCT
CTCCTCCCCCCCGTAATCCTCCTACTGAAATTCTCACTCCTCTGTTTCCA
CTTTGGCTTTCTTTCTTTCCTTTGTATTGTTCTTCCCCCCCTTCCCCTAT
TTTCCCCTTCTTTCTCCCCCTCTCTGGCCCCCCTCTCTTTCCTCTATTTC
CCTTTTTCTTTTTCTTTCCTTTCTCATTACCAATGTCCTCTCTCGCTACT
CTTTCTTTTTTATTCCCCCCCCCCTCCCCTTTTTTTTCCTTTTTCCTTCC
ATTCCCCTTTCTCTCCTCTTGTCTTTCTCCCTCTTCTTCGNCCCCCCTTT
CCCCCCGTACTTTCTTTACTACCCCTAACACTCTCGATACATCACTTCTT
CTCGCCCTTTCT

ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTCAGCATCTACTGAGTATCAAGCA
ATTGGCAACTATCACCATCATGGCTACTGATAAAACAAATGAAAAGTTGT
GATATATCAGCATTACACTTTCCAACACATCAACTGTTACCTGACCTCTA
CTAGGCAGTAACTACTGTAATTAGAGTTAGCCAGAGTAAATTTGTTCCCT
CTCCACTTCTCTAAAAGGTGACTCTGGGGAAAAGCAGATAAAAACAAAAA
TGCATTGCACCTAGGAGAGTCTTCTGCAATGATGAGTCTTCTTACTCTCT
GCTAAAGAGGGATGCTGGCAACAACAACAACAACAACAAACAACAAAAGT
CTCCACCCCAGTCAAATAGAAATACAGATGATCCATAGATAGAGATAAAT
TTAACTTTGTGGGGCTCAGATCAAAATCAAGGGTCTATGTCTGTCCAAAG
TGAGGTCTACTTCAGACTATTACATACTTTCCATAGGCATTATGCCCTGT
AATTCCTAATTTGATACCAAAAAACGGAGAAGGTTTATTTACTTCCACCG
CTTGATTACCGAACCCAAACCGTGGGACCCCCAAAAAATACTTATTTAAA
TTGGCCCAAAAGTAATGGGGGAAAAATTTATTGGATTTTTTTTTAAAAAA
AAAAAAAAGGGCCCCTCTTCTTATTAAAAAAAACCCTACCCTGATAAAAA
AAAAGTTCTGGGTAGAAAAATTTTTTCACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_n24.g1 MSMg01no397_n24.g1 CHROMAT_FILE:
MSMg01no397_n24.g1 PHD_FILE: MSMg01no397_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:27 2005
         (389 letters)



>mm_chr1_19470654_19471442
          Length = 789

 Score =  665 bits (344), Expect = 0.0
 Identities = 385/416 (92%), Gaps = 27/416 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctcagcatctactgagtatcaagcaattggcaactatcaccatcatggctactgata 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 actctgagcatctactgagtatcaagcaattggcaactatcaccatcatggctactgata 437

                                                                       
Query: 61  aaacaaatgaaaagttgtgatatatcagcattacactttccaacacatcaactgttacct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 aaacaaatgaaaagttgtgatatatcagcattacactttccaacaaatcaactgttacct 377

                                                                       
Query: 121 gacctctactaggcagtaactactgtaattagagttagccagagtaaatttgttccctct 180
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 376 gacctctactaggcagtaactactgtagttagagttagccagagtaaagttgttccctct 317

                                                                       
Query: 181 ccacttctctaaaaggtgactctggggaaaagcagataaaaacaaaaatgcattgcacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccacttctctaaaaggtgactctggggaaaagcagataaaaacaaaaatgcattgcacct 257

                                                                       
Query: 241 aggagagtcttctgcaatgatgagtcttcttactctctgctaaagagggatgctgg---- 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 256 aggagagtcttctgcaatgatgagtcttcttactctctgctaaagagggatgctggcaac 197

                                                                       
Query: 297 -----------------------caacaacaacaacaacaacaaacaacaaaagtctcca 333
                                  |||||||||||||||||||||||||||||||||||||
Sbjct: 196 aacaacaacaacaacaacaacaacaacaacaacaacaacaacaaacaacaaaagtctcca 137

                                                                   
Query: 334 ccccagtcaaatagaaatacagatgatccatagatagagataaatttaactttgtg 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ccccagtcaaatagaaatacagatgatccatagatagagataaatttaactttgtg 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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