BAC Information

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BAC

Clone NameMSMg01-397P01
Chromosome1 (Build37)
Map Location 16,240,669 - 16,241,028
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10
Downstream geneEG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397P01.T7 (MSMg01no397_p01.b1)MSMg01-397P01.TJ (MSMg01no397_p01.g1)
ACCAG498161AG498162
length813772
length of high quality
(start - end)
96 (74 - 169)360 (75 - 434)
definitionCHROMAT_FILE: MSMg01no397_p01.b1 PHD_FILE: MSMg01no397_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:32 2005CHROMAT_FILE: MSMg01no397_p01.g1 PHD_FILE: MSMg01no397_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCAAAACCAGCCGCGGA
ATTCTTTCCTTGCAGATAGAGCGAGGCAGGCATAATATCTATGTAAGCAA
TCCCAGCTTTCCACTCCATAGGCATGGAAGTTCCATGGTACCGTATTCTC
ATTTTAATTTTTTGGGTTTTTTTTCTTTTTTCCCCCCAACCCCCCCCCCC
CTCCCCTATATCTTTTCCACCCCTTCCTTTTCCCTTCTCACATTTTCTTC
TCTCCCCCCCCCCTTCCTCTTCTCTACTCTTCCCCTCTTTTCCCTTACTC
CCTCTCCCATTTTTTTTTTCCCTTCCTCCCTTCCTTTTCCCCTCTCCTTT
CTCTCCTCTCCCCCTTTCTTCTTTCTCCTCCTTTCCCCCATCTTTTTTTT
TTTTTCCCCCCCCCCCTTACCCATTTTTTCCCCCCCCTTCCCTTCCTCCA
CCCTCTACTTTCTCTCCTCCCCCTTTCACCCCTCTCCTCTTTCCTACCCT
TCCCCCTACCCTCTCCCCTATTTCTCACCCTCTCCTTCCTCCGTCCTTCC
CCCCTCCCCCCATCCCCCACATTCTTTCCCCCTCCCCCCTCTCACCCCCC
TTTTCTTCCCCTTCCTACCCCCTCCTTCTTTTCCCCCCCTCTTCTCTCCC
TATCCCTACCCACTTTTTTTCCCCTAAATCTCTCCTTCCCACCCTCCATT
TCCCTTACCCCTCTCCTTTTATCTCTCCCACCCACATCCTCACCTCCCCC
TCTCCCCTTTCCCTATATCTCCCCTTTCCTCTCTTCTTCCCTCACCTCTT
CTCTATTACCTCN
ACTGCTTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGAACGTTTCTGCTTCCTGATCCC
ACTTTAAAGACAGGTATTACATTTTTAGCACAGAGACCTGCCCCTATGAT
TCCTATCTTAGAGAATTAGTCCTGTTCTTTGGCAGTTTTCTTTTAAAGAC
AACCAGAGGGAGTCACTTACTAACCACAAGTACAAAATGTTTTAACAGCA
AATCTGAATTAAAAACTCAGTAACGTGGAACAAATGAACCCCTCGTCTCA
TTTCCCAACTAAAACCCTGGTTACATTCTCCCGTTTCTAACCCTTTCTTA
CTGCAAGCCATCAATCCACTGACTTCCTCCCGCTCCTCTGAGCTTTGAAC
TGTACCTTTACAGAGCTATAAATTAGCATTTCACTGAACTGCACTATAAT
TTGCATTTACTTTTTTAGAGTCAAAGTTGCCTATTTGGAAAGACTTCTTT
TTAAGTCCTTATATATTGCTTTGAAAAAGTTTTGCCCTACTTTTCATGCT
TTTACTTAATTTTCAAAACCTACCCTGTTTTTTTATCTCTCGATGCCTCT
TTTAAAATTGTTCTCCGTGCCGTTTTTTTCCTATTTTTTCTTTTTCCATT
CTTATTTCTCTCTTTCCTTTTTACCTTCGATTTCCATTTCTTTTTTTCTT
ATATTCCTTTTTTCTTCTCCCTCTTTTTCTCCTCCTTCTCTTGTACTCCC
TTTCCCCTCCCCCTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_p01.g1 MSMg01no397_p01.g1 CHROMAT_FILE:
MSMg01no397_p01.g1 PHD_FILE: MSMg01no397_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:32 2005
         (360 letters)



>mm_chr1_16240469_16241228
          Length = 760

 Score =  681 bits (352), Expect = 0.0
 Identities = 358/360 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgaacgtttctgcttcctgatcccactttaaagacaggtattacatttttagcacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgaacgtttctgcttcctgatcccactttaaagacaggtattacatttttagcacaga 501

                                                                       
Query: 61  gacctgcccctatgattcctatcttagagaattagtcctgttctttggcagttttctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacctgcccctatgattcctatcttagagaattagtcctgttctttggcagttttctttt 441

                                                                       
Query: 121 aaagacaaccagagggagtcacttactaaccacaagtacaaaatgttttaacagcaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaagacaaccagagggagtcacttactaaccacaagtacaaaatgttttaacagcaaatc 381

                                                                       
Query: 181 tgaattaaaaactcagtaacgtggaacaaatgaacccctcgtctcatttcccaactaaaa 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 tgaattaaaaactcagtaacgtggaacaaatgaacccctcatctcatttcccaactaaaa 321

                                                                       
Query: 241 ccctggttacattctcccgtttctaaccctttcttactgcaagccatcaatccactgact 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccctggttacattctcccatttctaaccctttcttactgcaagccatcaatccactgact 261

                                                                       
Query: 301 tcctcccgctcctctgagctttgaactgtacctttacagagctataaattagcatttcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcctcccgctcctctgagctttgaactgtacctttacagagctataaattagcatttcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)