BAC Information

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BAC

Clone NameMSMg01-397P07
Chromosome1 (Build37)
Map Location 39,922,003 - 39,922,243
singlet/doubletsinglet
Overlap genenone
Upstream geneChst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065
Downstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397P07.T7 (MSMg01no397_p07.b1)MSMg01-397P07.TJ (MSMg01no397_p07.g1)
ACCAG498173AG498174
length806922
length of high quality
(start - end)
239 (70 - 308)54 (122 - 175)
definitionCHROMAT_FILE: MSMg01no397_p07.b1 PHD_FILE: MSMg01no397_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:33 2005CHROMAT_FILE: MSMg01no397_p07.g1 PHD_FILE: MSMg01no397_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAAGTCTTCCTTTGCTAGTCTCTGGCCTATGCTTGTTGTTTGTTTG
ATTACAAGAGACAGTCTGGCTGTGCAGATCCTCAGGTTGACCTCAAACTT
GGGATCCTCCTACTACGGCATGTTGGGATTACAGTCCTGCCCCTACCCCC
CCCCCCATGCCTCGATTCTTTCTTGTGCTCTTAAAAGAATAATGGGCTCT
ATCAGGAAGAGGGTGTGGTCTAAGGGGAGACACCCCTAGCTCCAGGACAA
ATCTGCAGTTCAGTGGTTATTTTTAGGTGGCCACGCCGAGGATAAGTCTG
CCTTGTGTTGACAGGGAACGACCGACAGAAGGATAGACTATTTTAAGACG
GGGTCTCTCTCTAGCCCCCCCCCCCTTAATAAATACTTACTATTACTAAC
TACCTATTACGGGAACAATATAACGGACAAACCGCTATTTTGGCGTATAT
TTCTTAGAATACGTGGTTGTATCTCTTCTCGGGTCCTTTCTTTCTTCTTT
CCCCCATGATTTACTGTTGTCCTTACCGGACCTCTTCCTACCTTCTTTTT
CCGTTTTTCCTCATACTTTTTTTCCAATCCCTTTTCTTCACATTCTCTTT
AGTCTTTTTTTCCTTTCTCATTTTTTCACCACCCTCCTTACTTCTTTTCC
TTTCTCTATTCCCTTTCCACCTCCATATTTTATTTTTTAACATCTCCCTT
CCTCTTATTTTTTCCTATTTCTATCTTCTTTCCTCTTCTTTTCGTTTATT
CCTTCG
AATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCATTGGCACAAGAATCCTGGAATAA
TTCTTGGGGAAAAAAAAAGGAGTCATTACATCCAAATCCTTTCTTTCTAT
TGCCAAGGGCTCAGAAGTTTTGTTTGGTTTTGTCTCTTTGTTTTGCTATC
TTTGGAACTTTGCCTTGATACTGAATAATGTGTTATGCATTTACCACTAT
TGTTCTACACTTATAATGGTATATGATATGCCTTTATTGCTGTGTTTCTC
AACCTCTCCAACTACATCTTTTTTTTTATTACAGCTTCCTTGTGTTACTT
TTGCACCCTAATTATTTTCCTTATCCTTTTGTTGTTCAATATCATCCCCT
GTTCTCTTCGCCTAATTGTTGTTGTCTCTCCCCCCCCCCCTTTTACTTTC
CCGATTTTTTTTCTTTTCCGCCTCAACAACTTTTTTCTTTTTTCCCTATG
TTTCTCTTATTTTTTTAGCATTTCTATCTTTTTTTTTTCCTTTTTCCCAT
TCTCTTTCCCAACTGTCTTTCTTTCACTCTATACCTTTATCTCTCCCCAT
TTTCCCCACCCACCACTCTTGTCTCCTCTCCATTTTTTTTCTCTCCTTCT
CATGTCTATATTCTTACCCACTCTGATTATTCTTCCATTATTATGTCTTA
TACTACTCTCTTTAACATACTTTTTTTCTTATATCAACACATCTCTTTCA
CAGAATTCTTTTCCTTATTAACCCATTTTTCTCATATATTCATCATACTC
ATTTATTTCTATCCTGTATTATTATAAACCTTTTGTTCATATCTTCCCTC
TTTTCGTAACCACCTCATTCAATCTTCTTACATCTTTTTATATTTCTCTA
TTCCCTATCTATCTTATTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_p07.b1 MSMg01no397_p07.b1 CHROMAT_FILE:
MSMg01no397_p07.b1 PHD_FILE: MSMg01no397_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:33 2005
         (239 letters)



>mm_chr1_39921805_39922443
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 238/241 (98%), Gaps = 2/241 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtctctggcctatgcttgttgtttgtttgattacaagagacagtctggctgtgcagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tagtctctggcctatgcttgttgtttgtttgattacaagagacagtctggctgtgcagat 258

                                                                       
Query: 61  cctcaggttgacctcaaacttgggatcctcctactacggcatgttgggattacagtcctg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 259 cctcaggttgacctcaaacttgggatcctcctactccggcatgttgggattacagtcctg 318

                                                                       
Query: 121 cccctaccccccccccc--atgcctcgattctttcttgtgctcttaaaagaataatgggc 178
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cccctacccccccccccccatgcctcgattctttcttgtgctcttaaaagaataatgggc 378

                                                                       
Query: 179 tctatcaggaagagggtgtggtctaaggggagacacccctagctccaggacaaatctgca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctatcaggaagagggtgtggtctaaggggagacacccctagctccaggacaaatctgca 438

            
Query: 239 g 239
           |
Sbjct: 439 g 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)