Query= MSMg01no398_c14.b1 MSMg01no398_c14.b1 CHROMAT_FILE:
MSMg01no398_c14.b1 PHD_FILE: MSMg01no398_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:49 2005
(585 letters)
>mm_chr1_125993447_125994431
Length = 985
Score = 1114 bits (576), Expect = 0.0
Identities = 582/584 (99%)
Strand = Plus / Plus
Query: 2 ctctgatagcacaagatggcttgagttcaattccaggaaccagattagaagagaactgaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctctgatagcacaagatggcttgagttcaattccaggaaccagattagaagagaactgaa 261
Query: 62 gctgtcctctctgctccacatgtgtccccacaccaccacccacatgaagaaaacatactt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gctgtcctctctgctccacatgtgtccccacaccaccacccacatgaagaaaacatactt 321
Query: 122 gcacaccaacaccaccatcactacaaacaacaataacagtgttcaacaaatgtaggtctt 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcacaccaacaccaccatcaccacaaacaacaataacagtgttcaacaaatgtaggtctt 381
Query: 182 gtgaaaatctacatggcaatcctttggcattctaggactggtcacacatcagctctcatg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgaaaatctacatggcaatcctttggcattctaggactggtcacacatcagctctcatg 441
Query: 242 tcagttatgtaaaacagcacagtatttacatgcaactgacacttgtcctatattttaaat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcagttatgtaaaacagcacagtatttacatgcaactgacacttgtcctatattttaaat 501
Query: 302 gatttttagataatttataatgtattacacaatgtaaaaactgtaaaacagtagggcaca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gatttttagataatttataatgtattacacaatgtaaaaactgtaaaacagtagggcaca 561
Query: 362 gacacacttctatagtgtttgtagaatagtttgttctgggataaacatgacccaaatgaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gacacacttctatagtgtttgtagaatagtttgttctgggataaacatgacccaaatgaa 621
Query: 422 cttaagaagaaaaggatttattttatcttataacttttgatcacagtccatcactgaggg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cttaagaagaaaaggatttattttatcttataacttttgatcacagtccatcactgaggg 681
Query: 482 aagcctagacttgaattcaggctggcagcaacatggaagggtgaactgaagcagagacca 541
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagccaagacttgaattcaggctggcagcaacatggaagggtgaactgaagcagagacca 741
Query: 542 taaagtgaagttgcttactggtttgctcaatggcttctctagtg 585
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taaagtgaagttgcttactggtttgctcaatggcttctctagtg 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_c14.g1 MSMg01no398_c14.g1 CHROMAT_FILE:
MSMg01no398_c14.g1 PHD_FILE: MSMg01no398_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:49 2005
(539 letters)
>mm_chr1_126192234_126193172
Length = 939
Score = 992 bits (513), Expect = 0.0
Identities = 532/545 (97%), Gaps = 12/545 (2%)
Strand = Plus / Minus
Query: 1 ttttccccatcgtactcattgctattgtttagttttataataaaattttatgtatgtatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttttccccatcgtactcattgctattgtttagttttataataaaattttatgtatgtatg 680
Query: 61 aaggtattattttgccctcataatgaaatattttgatgacaagttgctgggtgacaagag 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 679 aaggtattattttgccctcataatgaaatattttgatgtcaagttgctgggtgacaagag 620
Query: 121 agtcttatcgcagttgtgttaggagttatatgagtgaaatgaaatgagaaactttagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agtcttatcgcagttgtgttaggagttatatgagtgaaatgaaatgagaaactttagctc 560
Query: 181 gctctcctcaccattgtactgatttgaatttatcaaattgttattagttggttttaccct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctctcctcaccattgtactgatttgaatttatcaaattgttattagttggttttaccc- 501
Query: 241 ttttttt------atggctgttgtgctgcagaggtaccttctgttcgacatgtctgagtc 294
|| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 -----ttgaggagatggctgttgtgctgcagaggtaccttctgttcgacatgtctgagtc 446
Query: 295 tctgatgcttaccacagtgtctcacatcatgtcagcattctgtgtgtaccacgacagtat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgatgcttaccacagtgtctcacatcatgtcagcattctgtgtgtaccacgacagtat 386
Query: 355 gcatgcacacatgaatgaatgcatatgaacaaacacacacaggaacatggaaaaaaaagg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatgcacacatgaatgaatgcatatgaacaaacacacacaggaacatggaaaaaaaagg 326
Query: 415 tagggagaagtcatcttttctcagtctaatcttttattgttgacttgtatttaatcttac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagggagaagtcatcttttctcagtctaatcttttattgttgacttgtatttaatcttac 266
Query: 475 actggtctttgctgctatctaaccctcaaagctgtgagaacataattgtacacacattac 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actggtctttgctgctatctaaccctcaaagctgtgagaacataattgtacacacattac 206
Query: 535 ataat 539
|||||
Sbjct: 205 ataat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
