BAC Information

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BAC

Clone NameMSMg01-398D18
Chromosome1 (Build37)
Map Location 166,907,615 - 166,908,154
singlet/doubletsinglet
Overlap genenone
Upstream geneBC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik
Downstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398D18.T7 (MSMg01no398_d18.b1)MSMg01-398D18.TJ (MSMg01no398_d18.g1)
ACCAG498386AG498387
length732732
length of high quality
(start - end)
543 (75 - 617)521 (81 - 601)
definitionCHROMAT_FILE: MSMg01no398_d18.b1 PHD_FILE: MSMg01no398_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:54 2005CHROMAT_FILE: MSMg01no398_d18.g1 PHD_FILE: MSMg01no398_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGCTTTCCCGATACTAGCTCGGGCAAGATATAGACACAT
CCAGAGATGCTTCCTTTAGACCACTGGAAGTCCAGTCAAGTTGACAATGA
AGATTAACCATTGCACGCACCATTACAAATGTTCATGATCCTAACTGACT
CAGATGACACTGTCATTGGCTTTAAGGATTGTGGAGTCAAAGAATCTGAG
CAAGTATGGGTTTCTTGTCAGTCTAGCCAAAATGACAGTCTCCATGATGG
CTACCACAGTTCTTGCTTCTTTTTTAAACTGTCAAGAGGAAAAATGGTTC
TAGACAGCTTTTCTAAAGTTTTGGATATGTGATGTGCCTTTTTAGTGTGC
TTATAGGATACATGTGGCTCAAATGTCTGCTATGACTGCCTAATAATTTG
AAGTGTTTTTTTTTTTAAACACACAGAGAAGTCTTACACAATAGCCTAGG
TTGTTCTGGAACATATTGTATAGCCCAGAGCAGTCTCAAACTGTGACAAA
CCTCCTGCCTCGTGGCACAACTGCTGGGATTATTAGTGTGAGTCACCTTG
CCTTTTAGAGTTGAGTCACTTAAAAACAATTCTATGTAGGAACCTTTTTA
AAGATTTCTGTGCTTTTATAAAGGGTTTATGTTTTGAAATAATCTCCAGT
AATGAGTTTCTGCTATTTGCAAACCCCCTATN
NNNTTTTCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTATGATGGACTGATGAA
CCAGAAAACAAGTTTCCTGCTTCTAAAACACACAGGTAAAACATACATGT
TTTCATCCCAGAAGGGAGAAAAATAGAAGGAATTAAGGAGCCTCTGGTCT
CACACACATTCAAGACTAAGCAAGAAAAAAAAAATCCCTTTGGGTTTCAG
GGTCTGTGAGCGCTCTTCTTTGGCTCTCAGATCCATCCGCTGGCTCACAG
CTCCTGTGCCTGTGTTCTCAGTATTTGCTTTATCATCCTTAGCCCTGGTT
CCATGGCTCTATCCAGTGAGTCACTCCTGTTCCTGAAGGCTGGCGCATGT
GTGCAGCTGCATAATTTATCATTTCGCTTCCTGCCTATATAATTAAGAGA
ATCCGAAAATACCTTTTTATTTTGTCCATCCTCTGTTCAATCTCAGACTG
AAATGTTTCTCGGGTATAATAATCCTCCAAGAGAGCATAGGCTGTCTGTG
TACACCAAGGGGAGTCACTCAGACAGACAATAGTTTCCCATATATTCTCT
GATAGGACATCCCTTCACTATTTCTGGCTGCTTCCCACATGAGGGAGTGT
ATTCATGAGTTGGAATGCCTAACCTTTCCAAAGAATGTCCCTCATGGGCC
CCTGGCTGGCTCCCCAGAATACATTTGCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_d18.b1 MSMg01no398_d18.b1 CHROMAT_FILE:
MSMg01no398_d18.b1 PHD_FILE: MSMg01no398_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:54 2005
         (543 letters)



>mm_chr1_166907483_166908425
          Length = 943

 Score =  957 bits (495), Expect = 0.0
 Identities = 530/543 (97%), Gaps = 3/543 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagctcgggcaagatatagacacatccagagatgcttcctttagaccactggaagtcca 60
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 672 ctagctcgggcaagatatagacacagccggagatgcttcctttagaccactggaagtcca 613

                                                                       
Query: 61  gtcaagttgacaatgaagattaaccattgcacgcaccattacaaatgttcatgatcctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gtcaagttgacaatgaagattaaccattgcacgcaccattacaaatgttcatgatcctaa 553

                                                                       
Query: 121 ctgactcagatgacactgtcattggctttaaggattgtggagtcaaagaatctgagcaag 180
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 552 ctgactcagatggcactgtcattggctttgaggattgtggagtcaaagaatctgagcaag 493

                                                                       
Query: 181 tatgggtttcttgtcagtctagccaaaatgacagtctccatgatggctaccacagttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tatgggtttcttgtcagtctagccaaaatgacagtctccatgatggctaccacagttctt 433

                                                                       
Query: 241 gcttcttttttaaactgtcaagaggaaaaatggttctagacagcttttctaaagttttgg 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcttcttccctaaactgtcaagaggaaaaatggttctagacagcttttctaaagttttgg 373

                                                                       
Query: 301 atatgtgatgtgcctttttagtgtgcttataggatacatgtggctcaaatgtctgctatg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 atatgtgatgtgcctttttagtgtgcttataggatacatgtggctcaaatgtgtgctatg 313

                                                                       
Query: 361 actgcctaataatttgaagtgtttttttttttaaacacacagagaagtcttacacaatag 420
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 312 actgcctaataatttgaagtg---ttttttttaaacacacagagaagtcttacacaatag 256

                                                                       
Query: 421 cctaggttgttctggaacatattgtatagcccagagcagtctcaaactgtgacaaacctc 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 255 cctaggttgttctggaacatattgtatagcccagtgcagtctcaaactgtgacaaacctc 196

                                                                       
Query: 481 ctgcctcgtggcacaactgctgggattattagtgtgagtcaccttgccttttagagttga 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctgccttgtggcacaactgctgggattattagtgtgagtcaccttgccttttagagttga 136

              
Query: 541 gtc 543
           |||
Sbjct: 135 gtc 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)