BAC Information

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BAC

Clone NameMSMg01-398G03
Chromosome1 (Build37)
Map Location 72,227,641 - 72,227,811
singlet/doubletsinglet
Overlap geneMreg
Upstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255
Downstream genePecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398G03.T7 (MSMg01no398_g03.b1)MSMg01-398G03.TJ (MSMg01no398_g03.g1)
ACCAG498497AG498498
length801784
length of high quality
(start - end)
174 (71 - 244)247 (73 - 319)
definitionCHROMAT_FILE: MSMg01no398_g03.b1 PHD_FILE: MSMg01no398_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:06 2005CHROMAT_FILE: MSMg01no398_g03.g1 PHD_FILE: MSMg01no398_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAATCCAATGGCTTACACAAATAGCCCTGATTAAACTATAGGTCACAAA
ACAAAACCATGAAGTAATGAACTGGAGGGAGGGTAAAGTAAACAGAATAT
ATCATGTATGTATACAAGTGTATGAAACTATCAAACAACAAAATTAGTAA
ATTAAAAAAATAATAATTAAATGTTAAGAAATGAATGCTTTGGGGTTAGT
GTATATAGCTCCAGTGCGTAAAAGCACTTGCTTGCTGCCCACCTGAATTT
AACCCATAATACCTATATGGTAGTTTAAGACAATTGACTCTAGAGACTGT
CCTCTGACCTCCATGTGTGTTCCTTGGCGTTCACGTGCCTCACCTACATA
CTTACATATATATATATAAATATTGACCATGTTTATATGACTGCTTATCA
CTAATATTCACACAATATAGGTTAAACTCTTCCCCCCTCCCCGCTGATTT
CCTCCTACCATCTGCTTTATTTCTAAACTCCCAGTTTCACCCAGTCCTCT
ATAGTGTACATTTCCTTGCACCCATTTGCTGAGAATAGATTATTCTCCAC
TCATCCCTTATTTCTTTGCCACTCCGTTCTTCTATCTTTTTTTCATCCCT
CAATTTGGCATATATTTCCTATTTATTTTTTCTCAGTGTAAGCTTTTCTC
ATCGTTTCACCATCCACCTTACTTTCTATAATATCCAAAATTATTTTGTT
CCCTCTCCATACTTCCTCCTTCTCCTGTTTTCCCTTCCCCCTCCCTTATC
G
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAATTATTTGTACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGCACATCTACCCCATGGAGTACTACTCAGCTATCACAAAGAATGAACT
TATGAAATCCCTAGTTCAATGGATGGACCCGCAAGGCATCATCCTGATTG
AGGGACTTTCTTCCCCTAGGAACTCATTCATAATGTACTCCTTGAAAATT
GGTATCTTATCCTTTCTCTCTAGCATCTCTATCAAACTTTATCCCTTTTT
TTAATCCCATTTAATCTTCTGTAAAATACAGACTATGGTATAGTGTCACC
CTCCTGTTCCCTCCTTCTATAACCGTTTAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_g03.b1 MSMg01no398_g03.b1 CHROMAT_FILE:
MSMg01no398_g03.b1 PHD_FILE: MSMg01no398_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:06 2005
         (174 letters)



>mm_chr1_72227437_72228010
          Length = 574

 Score =  315 bits (163), Expect = 8e-91
 Identities = 169/171 (98%), Gaps = 1/171 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gccctgattaaactataggtcacaaaacaaaaccatgaagtaatgaactggagggagggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gccctgattaaactataggtcacaaaacaaaaccatgaagtaatgaattggagggagggt 264

                                                                       
Query: 65  aaagtaaacagaatatatcatgtatgtatacaagtgtatgaaactatcaaacaacaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagtaaacagaatatatcatgtatgtatacaagtgtatgaaactatcaaacaacaaaat 324

                                                              
Query: 125 tagtaaattaaaaaaa-taataattaaatgttaagaaatgaatgctttggg 174
           |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 tagtaaattaaaaaaaataataattaaatgttaagaaatgaatgctttggg 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)