NGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGGTGTCCGCTTGATACTGTAGAAAATGGGTGACAAGCTC
TGAGACATTCCTGCTGGTCCGAATCATGAAGAAGCAAGCAAAGTAGTTTT
GAGACATGAAGTGATCTTCAGGTTGGCCTGATGAGAAGGTCAGAAAGGAG
CCTTTTATTTTTAAAGGTGATTTGTTACAACAGAAGGCATGACTTCAATG
TTCTGTTTCATAATGTCACATATAGCTTGTCTATATGCTGACGTCCTCAA
GTATGTCAGTCTCTGAAGAACCATTCTGGAAATGCTCTTATCTGTGTTTT
ATGCTGTGGGGAAATTGTTTTATGTCACTGTTAGTGAAACAGGTGTTTAC
ATAGCACCTTGCAGCAAGGATGGGAGATACAGTGGAAGATGAGAATGGGG
AAGAAGACAGAGCCAAATATATTTAGGTTGTAGCCTAAGTTCATTATTTA
ATATGAGTTAGATAGGACTGGGGAGACGACTCAGTACAGTGACTGCTGTG
TGTTCATGGGGACATAAGTTGGCACCTTCAGAACCCATGTCAAACACTGG
AAGTGATAGTATGCATCAGGTTTGGTGAGAGAACCTTTCCTAAAACAAAT
AAAGCAATTAAGGAAAGACACCCAGTGACACTTCACCCTCTGGCTTCTAC
ACCTACACTCCCCCTTTTGCATGTGCGCCTGCATATCCCTATGCN

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACA
GTCTGTTTTACGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTT
CTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACAC
TTCATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAA
TCCTTCTCAACAGTCTGTTTTATGGGAACACTTCATTACCATGACCCGCA
GTTCTGGTTCCGGAATGATTTATCTTCCTTGCCCCGGTGATGGTAACCGT
CCCAGGTTTTCTCATCCCAGGATTTCTCGTCTCAGGTTTTTTCTTCCCGG
ATTTTCTCGTCCCGGATTTCCTCGTCCCGGATTTTCTCGTCCCGTCCCGG
GTCTCAGCACCAACTCTTAAACGCTTTCGGCACCAACTCTTACACGCGTT
CACGCGACCCTCCAGGAAGAACGCAACAAACCGGAATCTTCTGCGGCAAA
GCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGAGA
GAAAGAAAACCAGAATAAGAACAAGAACTAGACAGCCAGAGAGAGAATTA
GAACCTGTACTGGTAAGCTAGAGAGAGACAAAGACCATGAGAGAGAATCA
GCTTGAACCAGAGAGAGAAAAAGAATGGCAAAAACCTGG

Query= MSMg01no398_i18.b1 MSMg01no398_i18.b1 CHROMAT_FILE:
MSMg01no398_i18.b1 PHD_FILE: MSMg01no398_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:18 2005
         (565 letters)



>mm_chr1_33179854_33180818
          Length = 965

 Score = 1033 bits (534), Expect = 0.0
 Identities = 555/562 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagggtgtccgcttgatactgtagaaaatgggtgacaagctctgagacattcct 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ggaattcagggtggcagcttgatactgtagaaaatgggtgacaagctctgagacattcct 606

                                                                       
Query: 64  gctggtccgaatcatgaagaagcaagcaaagtagttttgagacatgaagtgatcttcagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gctggtccgaatcatgaagaagcaagcaaagtagttttgagacatgaagtgatcttcagg 546

                                                                       
Query: 124 ttggcctgatgagaaggtcagaaaggagccttttatttttaaaggtgatttgttacaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttggcctgatgagaaggtcagaaaggagccttttatttttaaaggtgatttgttacaaca 486

                                                                       
Query: 184 gaaggcatgacttcaatgttctgtttcataatgtcacatatagcttgtctatatgctgac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaaggcatgacttcaatgttctgtttcataatgtcacatatagcttgtctatatgctgac 426

                                                                       
Query: 244 gtcctcaagtatgtcagtctctgaagaaccattctggaaatgctcttatctgtgttttat 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 425 gtcctcaagtatgtcagtctctgaagaaccgttctggaaatgctcttatctgtgttttat 366

                                                                       
Query: 304 gctgtggggaaattgttttatgtcactgttagtgaaacaggtgtttacatagcaccttgc 363
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gctgtggggaaatcgttttatgtcactgttagtgaaacaggtgtttacatagcaccttgc 306

                                                                       
Query: 364 agcaaggatgggagatacagtggaagatgagaatggggaagaagacagagccaaatatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agcaaggatgggagatacagtggaagatgagaatggggaagaagacagagccaaatatat 246

                                                                       
Query: 424 ttaggttgtagcctaagttcattatttaatatgagttagataggactggggagacgactc 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 245 ttaggttgtagcctaagttcattatttaatatgagttagataggactggggagatgactc 186

                                                                       
Query: 484 agtacagtgactgctgtgtgttcatggggacataagttggcaccttcagaacccatgtca 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 185 agtacagtgactgctgtgtgttcatggggacataagttggcaccttcagaacccgtgtca 126

                                 
Query: 544 aacactggaagtgatagtatgc 565
           ||||||||| ||||||||||||
Sbjct: 125 aacactggaggtgatagtatgc 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)