BAC Information

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BAC

Clone NameMSMg01-398K14
Chromosome1 (Build37)
Map Location 175,572,796 - 175,573,353
singlet/doubletsinglet
Overlap geneAI447904
Upstream geneLOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121
Downstream geneE430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398K14.T7 (MSMg01no398_k14.b1)MSMg01-398K14.TJ (MSMg01no398_k14.g1)
ACCAG498711AG498712
length728727
length of high quality
(start - end)		558 (80 - 637)523 (85 - 607)
definitionCHROMAT_FILE: MSMg01no398_k14.b1 PHD_FILE: MSMg01no398_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:28 2005CHROMAT_FILE: MSMg01no398_k14.g1 PHD_FILE: MSMg01no398_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTCATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACATC
CGCGGAATTCTTTAGATTACCAGAGTTTGACATTGTCCTGAAGGAGAAGT
TCATACCAAATAAGGTCCTTACCATCTCAAACTATGTTGGCTGCAATGGG
TTCATAAATATATACAGTGCATCTAGTGTGTCAGAGGTAAATGATGGCGA
ACCAATGAATATCCCACTTTCACTGAGGAAAAGTGCCAATCGAACACCTA
AAATCAACTATCTTTGCTCGAAGAAAAGAGGAATATTTGTGAATGGAGTG
TTTACTGTATGTAAGGTAAGCTATTGTATTATATGTTAAAATTTCTTCTG
CAATCTCTAATTTTCAATCTTAGTTTGGCAGATGCTATCGGTCAATTTAC
TGAGTGACAGAACTCAAGGCATTCTTGATCAGTATTGGAGACTGGGATAT
CATGATGAAAATTGCTTTAGAAAGAGCTTTGCCAAGAAATGGTGGCTATT
CATAGACATCCATAGACTGTGCATTTACATCAATTCTTGTATCATTAAAA
TTTTGCTTTGTTGAGTTCTTTACCTCCTATATTAGTGAGAATTTGAAGGA
GAATTTGAGAGTTGATGTCCTAAGAAATGACACAGGCTGTCATAACCCAN
ACAAAAATAATAATAAACCCATCTGCTCCCAAATGGAGCTAGTGCAGAAA
CTTGGGTTCCCTGGCTTCTATTTCTTAN

NNAAATTCCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATAGGAGCAGTGG
GTTCCTTCATGGCCCCTTATGAATTCCCTGACCTTTATGATTATTTGATA
TAAAACACATTAATCTGAAGATTCAAAGCTGATATCTAACAATAAGAAGA
AACATATAATTCTAGTCTTTCTGAGTCTGGGTTATCTCACTTATAATGAT
TGTTTCCAGATCAATCCATTTACATACAAATTTCATCATTTATTATTTTC
TTAACAACTGAATAATACTCTATTTGTAAATGTACTATATTCCATTATCC
ATTCATCATTTGATAGACACCTTGAATATTTCCATTCCTGGATATTGTAA
ATAGAGCAGTAATAAAGATGGATGAAAGGACATTTCATGAAAGGGCAAGA
TAGCCTTTGGAGATAATTCATCAGGAATGACTTTCTAACATGGGATGGGT
CTCAAGTTGGGCCAGTCATTGGTTGGCCCTTCCCTTAATCTCTCTTTCAT
CTTTACCCCTACACATCTTGTAGACAAGAAAAATTGTGGGTTGAAGGTAT
TGTAGCTGGATTTGTGGACTTCCATTGGAAGTCTTCTCTGGTTACAGGAG
ATGGCTGTTCACTACCATTTGATAAACCCAGGATGGTTGACACCCCAAGG
GAGAAAAAAAAGGAGAGTAGAAGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_k14.b1 MSMg01no398_k14.b1 CHROMAT_FILE:
MSMg01no398_k14.b1 PHD_FILE: MSMg01no398_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:28 2005
         (558 letters)



>mm_chr1_175572596_175573553
          Length = 958

 Score = 1079 bits (558), Expect = 0.0
 Identities = 558/558 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattgtcctgaaggagaagttcataccaaataaggtccttaccatctcaaactatgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattgtcctgaaggagaagttcataccaaataaggtccttaccatctcaaactatgttg 260

                                                                       
Query: 61  gctgcaatgggttcataaatatatacagtgcatctagtgtgtcagaggtaaatgatggcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgcaatgggttcataaatatatacagtgcatctagtgtgtcagaggtaaatgatggcg 320

                                                                       
Query: 121 aaccaatgaatatcccactttcactgaggaaaagtgccaatcgaacacctaaaatcaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaatgaatatcccactttcactgaggaaaagtgccaatcgaacacctaaaatcaact 380

                                                                       
Query: 181 atctttgctcgaagaaaagaggaatatttgtgaatggagtgtttactgtatgtaaggtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttgctcgaagaaaagaggaatatttgtgaatggagtgtttactgtatgtaaggtaa 440

                                                                       
Query: 241 gctattgtattatatgttaaaatttcttctgcaatctctaattttcaatcttagtttggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctattgtattatatgttaaaatttcttctgcaatctctaattttcaatcttagtttggc 500

                                                                       
Query: 301 agatgctatcggtcaatttactgagtgacagaactcaaggcattcttgatcagtattgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatgctatcggtcaatttactgagtgacagaactcaaggcattcttgatcagtattgga 560

                                                                       
Query: 361 gactgggatatcatgatgaaaattgctttagaaagagctttgccaagaaatggtggctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactgggatatcatgatgaaaattgctttagaaagagctttgccaagaaatggtggctat 620

                                                                       
Query: 421 tcatagacatccatagactgtgcatttacatcaattcttgtatcattaaaattttgcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatagacatccatagactgtgcatttacatcaattcttgtatcattaaaattttgcttt 680

                                                                       
Query: 481 gttgagttctttacctcctatattagtgagaatttgaaggagaatttgagagttgatgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgagttctttacctcctatattagtgagaatttgaaggagaatttgagagttgatgtc 740

                             
Query: 541 ctaagaaatgacacaggc 558
           ||||||||||||||||||
Sbjct: 741 ctaagaaatgacacaggc 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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