Query= MSMg01no398_l06.b1 MSMg01no398_l06.b1 CHROMAT_FILE:
MSMg01no398_l06.b1 PHD_FILE: MSMg01no398_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:31 2005
(409 letters)
>mm_chr1_60432605_60433413
Length = 809
Score = 706 bits (365), Expect = 0.0
Identities = 397/413 (96%), Gaps = 12/413 (2%)
Strand = Plus / Minus
Query: 6 gaattcactttgtttaccaggctggtctcaaactcacagagatccacctatccctccctg 65
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaattcactttgtagaccaggctggtctcaaactcacagagatccacctatccctccctg 683
Query: 66 cctctcaagtgctggaattaaagacatgtaccactatgcctggttaaataatt------a 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 682 cttctcaagtgctggaattaaagacatgtaccactatgcctggttaaataattaaaaaaa 623
Query: 120 aaaaaaaaaaaaacagaaacaaatgaaaatatatgtagatctatgtatatatttttctat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaaaaaaaaaaaacagaaacaaatgaaaatatatgtagatctatgtatatatttttctat 563
Query: 180 tatattctattgcaaatctatagaaatattttaagatccatatatctttcctacatatta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatattctattgcaaatctatagaaatattttaagatccatatatctttcctacatatta 503
Query: 240 gcataagctttatgttataaatgaaccat---ctgatgtttgccttttaatgagattttc 296
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 502 gcataagctttatgttataaat-aa--attacctgatgtttgccttttaatgagattttc 446
Query: 297 ctttcattgtcgtcttacctgagctgctcaattttctctgaagtgataggaccctcccct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttcattgtcgtcttacctgagctgctcaattttctctgaagtgataggaccctcccct 386
Query: 357 aaaacttggtctatctccttgcatagcttcttctgaacttctccagacgtcgt 409
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 aaaacttggtctatctccttgcatagcttcttctgaacttctccagtcgtcgt 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_l06.g1 MSMg01no398_l06.g1 CHROMAT_FILE:
MSMg01no398_l06.g1 PHD_FILE: MSMg01no398_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:31 2005
(400 letters)
>mm_chr1_60239342_60240141
Length = 800
Score = 688 bits (356), Expect = 0.0
Identities = 386/400 (96%), Gaps = 8/400 (2%)
Strand = Plus / Plus
Query: 1 gaaatatctgattcaggcctatcattttgccattcagaaatacttttctttgacttcctt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gaaatatctgattcaggcctatcattttgccattcagaaatacatttctttgacttcctt 260
Query: 61 catgtaaatttttgcatagtaaatttgatcttaggccattgggaagggtgttccttaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtaaatttttgcatagtaaatttgatcttaggccattgggaagggtgttccttaaag 320
Query: 121 ggtgtttctcaagtgaggatctacgttagtactttgaagatacagcaatgatcttataac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 321 ggtgtttctcaagtgaggatctacgttagtactttgaagatacagcaatgatcagagaac 380
Query: 181 cattcattcccagtctgttggttaacttaggtctgtgtggttatgttctcagatcacac- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattcattcccagtctgttggttaacttaggtctgtgtggttatgttctcagatcacaca 440
Query: 240 ---tttcggtagttttgcattatatattcaagtttgtttttgaagtaaaatttcatctta 296
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcct----gtagttttgcattatatattcaagtttgtttttgaagtaaaatttcatctta 496
Query: 297 ctaaccagcaatttatcccgtaagaagtcatctcatttccactgccatttttcttaactt 356
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 497 ctaaccagcaatttatcccgtaagaagtcatctcatttccactgttatttttcttaactt 556
Query: 357 cctggtttgatagtcatacattttttttggtttttttttt 396
||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cctggtttgatagtcatacattttttttggtttttttttt 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
