BAC Information

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BAC

Clone NameMSMg01-399A21
Chromosome1 (Build37)
Map Location 136,057,705 - 136,058,075
singlet/doubletsinglet
Overlap genenone
Upstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1
Downstream geneChi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399A21.T7 (MSMg01no399_a21.b1)MSMg01-399A21.TJ (MSMg01no399_a21.g1)
ACCAG499012AG499013
length723749
length of high quality
(start - end)
375 (45 - 419)92 (75 - 166)
definitionCHROMAT_FILE: MSMg01no399_a21.b1 PHD_FILE: MSMg01no399_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:58 2005CHROMAT_FILE: MSMg01no399_a21.g1 PHD_FILE: MSMg01no399_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAACCCGCGGA
ATTCATTCTCCCTTCCTGCCATACTGAAGATCTCGAAAAAGAAAGGACTT
GGAACAGGGACCCTTAAAGTCAGCATAAAGAGAATATCACCCTTCTGCAG
TCCTCGCATGTCACCCCTGGAGTAGAGGGAAGGGCACGTTGCCTTTTCTT
GCTCTGTTCTTCTGTGACCTAGAGCAAGACCTTTTCTCATTAGAGTCCTA
CTAAACAGTGGGCTGGTTACCACAGCCAGCCACTGCCATCACTGGATGTC
CACTCTCTAAAAAGAATACAGGGTAATCTTCATACTCCACTTGATGCCAA
ACACAGACTCTGCGTCCTGCTCTCCCAGGCAGACGTTCCCTTTAGCTAGG
AGCTGAGTTAGATGTGGGAAGCTGGGCCCACAGCTCCTCCCCTGGTATCC
CGCACATTACACAGAGGAACATTTGTCTGTCTTGGTCAAGTACAGGGTTC
ACAACAATGGGCGGACAGGTGTCTAATGCCACCTTTTGCCTTGGGGTCTG
CTTCACCAATTACTCACGGCCTCTGTTTCCACCGGTGACCTCAGCTGGGT
CACCTTGCCTGTCCACCCTGAGTCTCTTCAGCCAAAGGTATCCAGTAGCG
CAACATGACGTCCAGGCCGTTTCCCGAACACCTCTGTGATGAGTCAAAAG
CTACTTGACTTATGAGAACCTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCAGTCTGATAAGGGCTCTCTGTAT
TATTGAAGAGGGAAGGGGCCCTAAGGACCTGAGAATGTTAATAAGGTAGA
GTTAGCTGGTGAGGCAGGCAGCAGTGTGACAAGGGGCTCTAAGAGAGGGT
TACATGAGACTTGAGGCCACCAGACCCTATGGATCCACTTTTATCCACCC
CTGTCTGCTGCCTCCCTCACAACACATGCATGGTTGCAACCTGGCTTAGT
ACTCCAACTGCGGACAGGCCCAGGCTGTCACATGGCTTCTTCCTTCCCAT
CTTTTCTAGTTGTCCCAGATTACTGCTCTAGTTCAGCTCATCTGCATGCC
TGAGAGAGCTAGGTACTGATACCCTTTGGCTCACGTTTTCCTCTTTCTGA
TATTTCCAGGCGTTTGTACTCCATATGGTGCTCTACCATGTTCCCCCTTG
CAGAGCATATGTTGCCTTATCCCAGCCCTGTATTGCTTTGAAATTAGCCC
CCACCAGACTGTTTCCTCCCCACACATCCCATCTATGTTTTCCTCACCGT
TTTTCTGTATCTGTCGCCCTGACTTATTTGATAGTAGTTACTTGTATTGC
CCTTGTCCCCGTCCCTGTTCTTCCGCGCCTTTTTTGTGCTTTTTATGAAC
GCGGGGCCCCCCCCCGTTTTCTCCAGATTTATTCCCCCCGCCCCACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_a21.b1 MSMg01no399_a21.b1 CHROMAT_FILE:
MSMg01no399_a21.b1 PHD_FILE: MSMg01no399_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:58 2005
         (375 letters)



>mm_chr1_136057501_136058275
          Length = 775

 Score =  679 bits (351), Expect = 0.0
 Identities = 366/371 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctcccttcctgccatactgaagatctcgaaaaagaaaggacttggaacagg 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctcccaacctgccatactgaagatctcgaaaaagaaaggacttggaacagg 264

                                                                       
Query: 65  gacccttaaagtcagcataaagagaatatcacccttctgcagtcctcgcatgtcacccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacccttaaagtcagcataaagagaatatcacccttctgcagtcctcgcatgtcacccct 324

                                                                       
Query: 125 ggagtagagggaagggcacgttgccttttcttgctctgttcttctgtgacctagagcaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagtagagggaagggcacgttgccttttcttgctctgttcttctgtgacctagagcaag 384

                                                                       
Query: 185 accttttctcattagagtcctactaaacagtgggctggttaccacagccagccactgcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accttttctcattagagtcctactaaacagtgggctggttaccacagccagccactgcca 444

                                                                       
Query: 245 tcactggatgtccactctctaaaaagaatacagggtaatcttcatactccacttgatgcc 304
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 445 tcactggatgtccactctctaaaaagaatacagggaaatctccatactccacttgatgcc 504

                                                                       
Query: 305 aaacacagactctgcgtcctgctctcccaggcagacgttccctttagctaggagctgagt 364
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaacacagactctgcgccctgctctcccaggcagacgttccctttagctaggagctgagt 564

                      
Query: 365 tagatgtggga 375
           |||||||||||
Sbjct: 565 tagatgtggga 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)