BAC Information

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BAC

Clone NameMSMg01-399E02
Chromosome1 (Build37)
Map Location 142,154,027 - 142,154,274
singlet/doubletsinglet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399E02.T7 (MSMg01no399_e02.b1)MSMg01-399E02.TJ (MSMg01no399_e02.g1)
ACCAG499162AG499163
length725752
length of high quality
(start - end)
284 (76 - 359)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no399_e02.b1 PHD_FILE: MSMg01no399_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:13 2005CHROMAT_FILE: MSMg01no399_e02.g1 PHD_FILE: MSMg01no399_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAATCCG
CGGAATTCATATTTATGCTTCTTTTCATTATTTACTAATGTTTTATCATT
TAAAAGGATATAAGTAGTGGTTGGTCACATTCCAAATCATAAATGTGCAA
GAAGGAAATGTCCAGGGTGCTGGATAGCTTGGCAATTAAAAGCACTGGAT
GGTCTAACTCAGGACTTGAATTTGGTTCCCAGAACCCACACTGAACAGCT
CAGAACAGCCTTCGAATCAACCCTCTGGGTTCTGACAGAGTCTTCTGACT
TCTGCAGGCACCCATACCCACAGATTCTCACACAAACACACACACACACA
CACACACACACACACACACACACACCAAAATCACACATAGCACATAGACA
CACAGGTAAACACACACATAAAAATTAAAGCCTTACAAAAACAATTTTCC
TACCCTTGTATTCCTATCAACAAAACTTATATCTATAATTTTCCAGATGG
TTTTCTCGTTTTATTGCACTTTACATTATAACTCACTGCCTCATGAAATT
ATCATTTATGCTCTTACCCGAGAGGAAAAAAATCCTTTAAGCCCAATAAA
TATCCTCCTTTCTAACAATAACAAGTCACCATCTGTCTTTCGCCCCAGGT
CACAGAAGGTAACCCTTCAGTGCTATTCATTNTCTTCCCGCATTTTTTAA
TATTGTGTCCCCGTTATATCCTGTN
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATTTACCTGGGGAGCTTAGC
AGCAGGCACTGCCTTTGTTTGTCCCAGGGAATGTGGAGGCAGAGTCCACG
TATGATCAGCCCTGTCTCACAAGGCCCTGGTAATACTTTCCTGGGACAAT
CAGGATGGTATGCTTTTTGGGCCTCCAACCTTAAAGAAATCTTTTTTTAA
TTGAAAATCAGTGCTTATAATAGTTTAAGGGTATGCTTAGTTTTGAATTG
TTAGTATGGATAGCAATTATGTTATAGAAAAACATGCTTACTTGTCTCAA
GAGACATATCCCTGGAGAGAATGCACATTATCTTATACCATATATCTCTC
TGCGGTATACCGCTATATTCCTAGAGCTCTTGAGATTGACAGTGGAAGAG
AACACGTTCACGTGCCGGCTGTACTGCACAGATTTGCTTATTCTCACTAC
GTTTTGGATTTATTTCGTTTCCCCCCTCCTTCTTTTTTTCTATTCCCCTC
CTTTTCCATTTTTTTCCCCCTCTGTCTCTTACTTCTTGCTTGCCACCCTC
TTTCATTTTTTTTTTTTTTCTCCTTTTCAATTCCCTTTCCGCTCCCCTTC
CGTTTGTTGCCCTCTTTTTTTTACTTATTTTCTTCCTCCACGTCTCGTAT
TCCCTCCCCTTCTCTTCTTCTTTGCCTTATTTTATTGTTTTCTCCCCCTT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_e02.g1 MSMg01no399_e02.g1 CHROMAT_FILE:
MSMg01no399_e02.g1 PHD_FILE: MSMg01no399_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:13 2005
         (245 letters)



>mm_chr1_142153827_142154474
          Length = 648

 Score =  441 bits (228), Expect = e-128
 Identities = 242/248 (97%), Gaps = 3/248 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaatttacctggggagcttagcagcaggcactgcctttgtttgtcccagggaatgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatttacctggggagcttagcagcaggcactgcctttgtttgtcccagggaatgtgg 260

                                                                       
Query: 61  aggcagagtccacgtatgatcagccctgtctcacaaggccctggtaatactttcctggga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aggcagagtccacgtatgatcagccctgtctcacaaggccctggtaatactttcttggga 320

                                                                       
Query: 121 caatcaggatggtatgctttttgggcctccaaccttaaagaaatcttttttt---aattg 177
           |||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||
Sbjct: 321 caatcaggatggtatgctttttgggcctccaatcttaaagaaatcttttttttttaattg 380

                                                                       
Query: 178 aaaatcagtgcttataatagtttaagggtatgcttagttttgaattgttagtatggatag 237
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaacagtgcttataatagtttaagggtatgcttagttttgaattgttagtatggatag 440

                   
Query: 238 caattatg 245
           ||||||||
Sbjct: 441 caattatg 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 648
Length adjustment: 9
Effective length of query: 236
Effective length of database: 639
Effective search space:   150804
Effective search space used:   150804
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)