BAC Information

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BAC

Clone NameMSMg01-399E06
Chromosome1 (Build37)
Map Location 188,978,094 - 188,978,314
singlet/doubletsinglet
Overlap geneSpata17
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneGpatch2, Esrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399E06.T7 (MSMg01no399_e06.b1)MSMg01-399E06.TJ (MSMg01no399_e06.g1)
ACCAG499170AG499171
length718735
length of high quality
(start - end)
233 (76 - 308)---
definitionCHROMAT_FILE: MSMg01no399_e06.b1 PHD_FILE: MSMg01no399_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:14 2005CHROMAT_FILE: MSMg01no399_e06.g1 PHD_FILE: MSMg01no399_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAAAATC
CGCGGAATTCACCTATTTCCAAATAAATAAAAAGCTATTATTTTCATGGT
ATATTTCTGTATGATGCCTCTACTACTATAATGGCTAAAATGACATTCCA
GTATGTTTGTGTACACACACACACACACACACACACACTCACACACACAT
ATAATATGTGACACTACAAATATGCAAACCTATGTACTAACATATCAACA
CATAAGTTACTAAACACATGTATCTTCTCATAAATACGCCTGCGTATCAT
TAAGGTTTTCTCTTTGAGATTATTTTTTATTATAGCACCATTTGTTTTCA
TAAATTTTATTTCTGAGATGCTCACGTTCTTTTCCTATCAGGTATAACAT
GACTGTCAACACAATGTACACCACCCCACAATCCTTTGAACCCGATATTT
TATTACACAGACCATCACTGGCGGTAATCTAGGTAAACATCTTAACAATC
GCTTGATTACCCGCCTGCTTGCTATCCCCAATCAGCACGTCCCTCTAACT
ACATAACTCACTTACAGTAAGGAAAGTATATTAACGCCCCCTTAAATATT
TTGCCTGTTTGTCTCAAAGATTGACCCCTGCCTCTTTTACCTCCCTTCCA
TATTTCATGTATCTAATTGATCGCTAAAAATATAACAAACGTCTGTTCTC
TCCTGTCGTCCAACCCTT
TCCTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACGGCAAGTCATGACTTA
CATGTTTCTGATGGCAAAAGCTGCTGAACACGCTCTCGAGTGCCGCTCAC
TTGTACTTCCCATGCGCACCTCCTGTTTGATTCATTATTTTTCCCACACA
CTTATTCTCATCTTACACAGCTTGATTTATCTTATTGGCCTATATCACCC
TCGTCTCTCCTCATCATTCCTCCATATTAACATTTCCTCACGGTAACACA
CTGAAATCACTTATCCCTCTAGCCCCTTTTTATCCCCTGTTCCTCCCTGT
TACTAGTTTGCTTACATGTACTCACTACATTCCCTTTTACGTTCTTTATC
TTCCATTGTCCCCCTTTTTCATTCACCCGCTTTTTGCTTTTCACGTTAAC
CATCCACGATGCCTGCCCCGGTTCCTCCAGACCATTATCCTATTCTACCC
ACTGTTGTCTATACAACCTTTCCCCACCTTTTCTTTTTTTTCTTTCCCCC
CTTATTCTTCATTAACGCCCCCCTTCTCTTCTTTCTTTCCACCCCCTAAT
TCTATCATAATGTTCCCCCCCTTCCCTTTCTTTCCCTCTCGCTCTTTTTC
CCCCTCCTTTTGACATCTTTTACTCCTACCCCCTTTTTTGCCCCCCCATC
CTTTCTCTCCACTCTTGTTTTTTTCCCCCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_e06.b1 MSMg01no399_e06.b1 CHROMAT_FILE:
MSMg01no399_e06.b1 PHD_FILE: MSMg01no399_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:14 2005
         (233 letters)



>mm_chr1_188977882_188978514
          Length = 633

 Score =  377 bits (195), Expect = e-109
 Identities = 218/233 (93%), Gaps = 12/233 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaaaagctattattttcatggtatatttctgtatgatgcctctactactataatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aataaaaagctattattttcatggtatatttctgtatgatgcctctactactataatggc 272

                                                                       
Query: 61  taaaatgacattccagtatgtttgtgtacacacacacacacacacacacacactcacaca 120
           |||||||||||||||||||||||||||||||||||||||||            |||||||
Sbjct: 273 taaaatgacattccagtatgtttgtgtacacacacacacac------------tcacaca 320

                                                                       
Query: 121 cacatataatatgtgacactacaaatatgcaaacctatgtactaacatatcaacacataa 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatataatatgtgacactagaaatatgcaaacctatgtactaacatatcaacacataa 380

                                                                
Query: 181 gttactaaacacatgtatcttctcataaatacgcctgcgtatcattaaggttt 233
           |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 381 gttactaaacacatgtatcttctcataaatactcctgcgtatcatcaaggttt 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)