BAC Information

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BAC

Clone NameMSMg01-399H02
Chromosome1 (Build37)
Map Location 195,267,145 - 195,267,315
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399H02.T7 (MSMg01no399_h02.b1)MSMg01-399H02.TJ (MSMg01no399_h02.g1)
ACCAG499305AG499306
length791870
length of high quality
(start - end)
171 (76 - 246)136 (81 - 216)
definitionCHROMAT_FILE: MSMg01no399_h02.b1 PHD_FILE: MSMg01no399_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:27 2005CHROMAT_FILE: MSMg01no399_h02.g1 PHD_FILE: MSMg01no399_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACACCCTATXXXXXXXXXXXXXXXXXXXXXXXCTATTCTAAGAGAATCC
GCGGAATTCCTAATTTCCGAGATTCTGCCAATGATAGGGCTGCTTCCTGT
GAGCATCCCTGCACTCTGGGGAATGTAACTGTGACATCCCTCATACCCTC
CCAGAAGGAGCAAAGAAAACAGCTCCCTACACTATGCTGAGGAAGAAAGC
TAGGCTCCTTGAAAATGCTACACCAACAATGTGACTTTTGCTTGCAGAGT
AAGATGAATTCGCCACTAACGAATAAGAGACACACTTTTGAAGTTAGCTG
TGCCTTGATCCCCACATCTGCTTGATCAGGACTAATTAAAGTGAAAGGAT
AAACCATTGACAAGTTAATAGCCGTGCTAACATCTCAAAGGGAAGGACGT
CAGGCTAGTATCCTTCCCACCCCCACCTGCTTGGTCGCCACCCATTTGCT
TTTATCTATACCCCTACCTGACTCTTCCCCTCCTCTGTCTCTGCTATCTA
CCTCTCGTTCTGCCCCGGTTCTTTTACTCTACCCTCCTCATTCAAAAATC
ATTCTTCTTAGTATCTCCCTTTATTCATTCTTCACCTTACACCCCTCCTC
GTATGCTATGCCTGTCTCTCCCCTACTTACTCTTTGTTTATCCTAATCAT
CTTCCTTTTCCTTTACTTTCTTCTCCTCCTCTCTCCCTCTCCCCATATTT
CCTCTTTTCTTCTTAAGCCGCTTGCCCATGTATGAATCCGGCTGTCCCCG
CACCTCTTTTTTTGTAATTCCCTACCCTATTACATCTACTT
TCTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCAGCTGCCATTTCCTA
CACAAGACATGCCCAAGACTGGGCCTGAGAGTATCCAGCCATGGAGGGAG
GAAGGGCTTATGAGGCTCCACCATTCTTGATAGCTGATAAGGGAGGGAGA
AACATTTTCTTTTACAAGTGGGATATTTGAAGTGGTATAACCAGTAAGGT
GCACTCAACTCCTGTATATAACATCTTCCCCAGGATCCTGTAGGTTAGCC
CGATGAGACTCATTGATTCTTGTCTATAGACAGAGTGAGAGAGACGCTAG
ACAGAGAGAGCGACTGATTTGTTCCTCCCCCCCCACTACCACCTCTTTGG
TGTTCGTCGTTTTTGTTTTGTGCAGCCCCCCCCCCCTCTCCCTTTATTAT
TTTTCCCCCCTTCTCTTCTTCCCTTTTACCCGCCTCCTTCCGCGCTTGTC
TTCTCCTCCCCTTTCTTCTTTTTCCGCCCTCCCGCTGTCTCCCTTTTTTC
TGTTCCCTCCTCTACTTTCTCCCCCCCCCCCCCCTTCCGTTCCTTTCCTT
TTCTTCCCTCCCGGCTTTCCTTCCTCCTCTTCCCCTTTTTTTTTTTTCCG
ATCTCCCTCTCATTCCTTGTTTTTCCCCCCCCTCCTCTTGTTCGCTCGTC
TCCTCCTTCCCTTCTCTTCGCTCTTTCTTTTTTCCCTCTTCTCCCCTCCC
CCCCTCTTACTTTTCCTCCCCTACTATCGCCCCGCAGGTTTTTGCTTCGT
TCTTGCTCCGCCTATTCTTTTCCGTTAACTCCTCGCTTCTATTTTCTCCT
TCTCGTGCCTCCCTCGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_h02.b1 MSMg01no399_h02.b1 CHROMAT_FILE:
MSMg01no399_h02.b1 PHD_FILE: MSMg01no399_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:27 2005
         (171 letters)



>mm_chr1_195266945_195267515
          Length = 571

 Score =  323 bits (167), Expect = 4e-93
 Identities = 170/171 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccaatgatagggctgcttcctgtgagcatccctgcactctggggaatgtaactgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgccaatgatagggctgcttcctgtgagcatccctgcactctggggaatgtaactgtgac 312

                                                                       
Query: 61  atccctcataccctcccagaaggagcaaagaaaacagctccctacactatgctgaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atccctcataccctcccagaaggagcaaagaaaacagctccctacactatgctgaggaag 252

                                                              
Query: 121 aaagctaggctccttgaaaatgctacaccaacaatgtgacttttgcttgca 171
           |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaagctgggctccttgaaaatgctacaccaacaatgtgacttttgcttgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)