BAC Information

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BAC

Clone NameMSMg01-399K12
Chromosome1 (Build37)
Map Location 36,172,106 - 36,172,383
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1
Downstream geneUgcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399K12.T7 (MSMg01no399_k12.b1)MSMg01-399K12.TJ (MSMg01no399_k12.g1)
ACCAG499467AG499468
length728790
length of high quality
(start - end)
246 (73 - 318)---
definitionCHROMAT_FILE: MSMg01no399_k12.b1 PHD_FILE: MSMg01no399_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:44 2005CHROMAT_FILE: MSMg01no399_k12.g1 PHD_FILE: MSMg01no399_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCCTCAGATCTTCCCATAATGTTCCAAATTTGGAAAGCCTGGTTAAAG
ACGTCACCTGTATTCAGGTTAACCCCAACGGGGGGAAGGAAGATCTCTCA
AGGAATCTGGGCTTGAGGACGCCTGGGAAACATTGGGAGTTGGACTTTAC
CGAAATCTGAGCTGGTGTTTGTAGACACCTTCTCAAGTTGGGTGCAGTTT
TGGAGTCTGACAATAACCTGCCCTTTGTGGTCAAAGTGTCTGATAATCTG
ACAAAGAATTGCATACATATTAGTTGTGTATAGAGGGGTCAGAGCCCGAG
TCAGGGAAAAAGGACAAAGAGAACTCTCAAGGAGACTCTGACCAAATTGG
TCCTAGAAACTGGTGAACACCCCCCCCCAGGCTCCTCCCCTTGCTCATAG
CCTATTATACTCCTTAGTGGACTTAGCCTCCCATTCTTTCCCAATTCCAA
GATTTTCCTCAAGCAGAATTGTCTAGATACTCCCGTCCCAAGCCCTCGCA
GGCTTTGCCGGAAGTTCGCCATGTCCTTGACCACACTCGGATGGGAACTC
TGCTATCTCTCATTTCCAAATCTGCCCACCAGTTCTAGCCAGGACACTTG
TCCCGCATAACCATTGTCCCTCCCCTGATCCTGGAATTTGTCTGCGCAGC
AACCTGTTCTTTCCTTCCTTGCCACCCT
CGATGCAGTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCGCAATCACTCATTAGACCGGCCGGCCCTGAA
CTCATCAGAGATCTCCCAGCCTCCGCCTCTCAAGTGCTGTTAAGGCTGGC
TACGAACTGTCTCCCCATGCCTAGATGACCACTTGTTCTCCAACCCCCGC
CGCTACTTTAGCATTTTACGCAATCTTCTTTCGTTTCGCCTGTTAGACAC
CCACTCCACTAGACTCAAGCCCTCAGCGCTTAACACACCTCTGTTTCCTG
CCTTGCTCTCCGCTGACCCACTATGTTCTGACTAGACTCCGATTCTTACG
CATATCCTGTAGCCGTGGCACGAGCTATTCCACCTTGCGCTTCTCACTTT
GTTGCATTGCAATCCCCCCCTCCCCCCCATCCACTATTTATTTTTTTTTG
ATTCCCAGAATTTCTGTCTCTCGTCCACCACTTTTCGTCACACCCTATGT
TTCCTTTCCCCGCCATCCTTTTGTCCTCCTTGTTCCTTTCCCCCGCCCCC
TCTTTTTTTTCTCTTCCCCCCCCGTTCTGATACTATCTACCTCCCCCCTG
TACCTTTTTCTTCAAAAACCCCCCGCCCCTTTCCTTTCCTTAATTTTGCC
CCCCGCTATCCCTTACCCTTACCCCCCCGCCACGTATTCTCTCCCTCCTT
TTTTCTCTCTTTAGATACTCGGCACCCCGCTCATCTTCCCTACCTTTACC
GTTCTTCCTCCCCCTCGTTTTATTTTTTTACCCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_k12.b1 MSMg01no399_k12.b1 CHROMAT_FILE:
MSMg01no399_k12.b1 PHD_FILE: MSMg01no399_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:44 2005
         (246 letters)



>mm_chr1_36171941_36172586
          Length = 646

 Score =  398 bits (206), Expect = e-115
 Identities = 243/278 (87%), Gaps = 35/278 (12%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttccaaatttggaaagcctggttaaagacgtcacctgtattcaggttaaccccaacggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gttccaaatttggaaagcctggttaaagacgtcacctgtattcaggttaaccccaacggg 225

                                                                       
Query: 61  gggaaggaagatctctcaaggaatctgggcttgaggacgcctgggaaacattgggagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gggaaggaagatctctcaaggaatctgggcttgaggacgcctgggaaacattgggagttg 285

                                                                       
Query: 121 gactttaccgaaatctgagct-----------------------------------ggtg 145
           |||||||||||||||||||||                                   ||||
Sbjct: 286 gactttaccgaaatctgagctactttttttttttttttttgccgtaagtatttgctggtg 345

                                                                       
Query: 146 tttgtagacaccttctcaagttgggtgcagttttggagtctgacaataacctgccctttg 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttgtagacaccttctcaagttgggtgcagttttggagtctgacaataacctgccctttg 405

                                                 
Query: 206 tggtcaaagtgtctgataatctgacaaagaattgcata 243
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tggtcaaagtgtctgataatctgacaaagaattgcata 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)