BAC Information

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BAC

Clone NameMSMg01-399O19
Chromosome1 (Build37)
Map Location 105,621,805 - 105,622,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041067
Downstream geneLOC383546, LOC100041134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399O19.T7 (MSMg01no399_o19.b1)MSMg01-399O19.TJ (MSMg01no399_o19.g1)
ACCAG499670AG499671
length752727
length of high quality
(start - end)
68 (46 - 113)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no399_o19.b1 PHD_FILE: MSMg01no399_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:03 2005CHROMAT_FILE: MSMg01no399_o19.g1 PHD_FILE: MSMg01no399_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATATATATATCTATATATATATATATATATATATATATATATA
TATATATATTTAATTATATATATATATCTATAAATGTCCATCCATTGCCC
CCTCCAGGGCAGTACCGACAGTTCCGCAGCCTATTCCTCTTCCCTACCCC
TCTGTCTCCAGGAGGATATCCTCTGCTCCCTTTAGGCCTCATCATTCCCT
GGCGTCCTATGTCTCCAAAGGATTAAGTGTCCTCCCCCAATAATGCCAGA
CCAGATACCCCCCTGCCAGATTTCTTGTTCCTGATTGTGCGTGTATGCTG
CCTGGCTGTCGCTTCCGTACCTGACAGATCTCTGGAGTTTATGTCCGTTG
GGATCGCTGGTCTTTCTACCCCCCCCCCCTTTCTCTTCTGCTCTCTTCCA
GTCTTTCCCTATCTCACCCATAGGCGCTCCCAATTTCCGCCCCGTTGGTG
GAATCTGGTTCCGCCTTTTTTTACGCCCCCGTTTGCTTCCCCGAGATTAC
CGCCTCCGCTTGTTCCCTGCCTTGTTATTCCCCTCTTTTTTCAGTTCCTG
CGGTCCGCCCTCTTTATCCTTTCGTTTCTCCCGTCGATCCTTTGCTGCTC
CCTTCTCTTGTCCCTTACTCTTCCTCTCCCTTTTTTCCCCCATTTTCCCC
CTTTGCCCCTCTTTTTGTACGGCCACCCCTCCTATTACTTTACTTTCTTT
CC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTCTCAGCACCCAAGAGTTGGCAGC
TAATAACTTCCTGTAATTCTATTTCCAGAGGATGAGACATCTCTAAGGGT
TTCCCTGGGCACTGCATGCAGGGGACATATGCTCAGACAGAGAAACATGC
AACCACATATATGAAGTGGCTTTTGGGGAAGGAAAAGTGTTTATTTTTTA
TTTTAAATTATTTTTTTTACTTGCTTGTAATTGCCCTCTGGTACACTGCC
CATACTCAGAGGACACATATGTGTTGCATGTGGGCAGTGATAATTGGACT
CTGGGAAGAATAAGGCATGAAACTGGGAAGGAGGCCGCGTGATTGGAGGA
AAAGTACAAATGCTAAGGTAACAAAATAATGACCTATCATTCAAAAAGCC
CTAATATATGATTCGAATAAAGTTTAAAATATTTCAATTATTATGAGCAC
AATGAACATAAATATAATATATTATCAATAAGATATGGGGCTGGTGAGAT
GGCTCAGCGGGTAAGAGCACTGACCGTTCTTCCAAAGGTTCTGAGCTCAA
ATCCCAGCAATCACATCGGGGCTCAAAACCACCCATAATGAGATCTGACA
CCCTCTTCTGGTGCCCGAATACAGCTTAAGTGTACTCACTTCAAACCACA
CATAACCCTTTTTACCCAGAACATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_o19.g1 MSMg01no399_o19.g1 CHROMAT_FILE:
MSMg01no399_o19.g1 PHD_FILE: MSMg01no399_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:03 2005
         (285 letters)



>mm_chr1_105621605_105622289
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttctcagcacccaagagttggcagctaataacttcctgtaattctatttccagaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttctcagcacccaagagttggcagctaataacttcctgtaattctatttccagaggat 260

                                                                       
Query: 61  gagacatctctaagggtttccctgggcactgcatgcaggggacatatgctcagacagaga 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagacatctctaagggcttccctgggcactgcatgcaggggacatatgctcagacagaga 320

                                                                       
Query: 121 aacatgcaaccacatatatgaagtggcttttggggaaggaaaagtgtttattttttattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatgcaaccacatatatgaagtggcttttggggaaggaaaagtgtttattttttattt 380

                                                                       
Query: 181 taaattattttttttacttgcttgtaattgccctctggtacactgcccatactcagagga 240
           || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacattattttttttacttgtttgtaattgccctctggtacactgcccatactcagagga 440

                                                        
Query: 241 cacatatgtgttgcatgtgggcagtgataattggactctgggaag 285
           ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 cacatatgtgttgcaggtgggcagtgataattggactctgggaag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)