BAC Information

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BAC

Clone NameMSMg01-400B18
Chromosome1 (Build37)
Map Location 174,064,901 - 174,260,429
singlet/doubletdoublet
Overlap genePex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9
Upstream geneSdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa
Downstream geneKcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400B18.T7 (MSMg01no400_b18.b1)MSMg01-400B18.TJ (MSMg01no400_b18.g1)
ACCAG499810AG499811
length791777
length of high quality
(start - end)		498 (48 - 545)442 (78 - 519)
definitionCHROMAT_FILE: MSMg01no400_b18.b1 PHD_FILE: MSMg01no400_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:18 2005CHROMAT_FILE: MSMg01no400_b18.g1 PHD_FILE: MSMg01no400_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,259,935 - 174,260,429)(174,064,901 - 174,065,342)
sequence
NTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATAGGCTACTTTTTCTGTTTTCCTCATCCATAAATAGAAAAA
GGGATAACTGTCTCACAGGATTGTCACAGAAATTAAATGAGATTCTGCTG
GATGGATTAGCAGTAGGAGCATGTAGCAGCAGACCTGTGCAACTCTGTGT
CTTTCCACTGATGGCATCATAGGCTGCTGCTGGGCAAGGACCTGTTCATT
TCATAATCGCCTCTACCTAGCCCAGTATGTGGTGTTTGAGCCCCCTAAGT
CTGCTGGGTTGATGGTAAGAGCTAGCCTAGACTTCTCTCTCTCTCTGTTG
GACATTTGAGGGTTTTCTCAACTTTTTGCTATGAGCAAAGTACATCTCAA
ACCTCTTTTATTTACATCACCTAATTTGATCTGCATCCCAGGTGAAGCCA
GCAGAAGAGGGCTGTTTGCCCACGCCCACACTCTGAGACAGACAGAATCA
CTATGGCTCAGAGAAGTGAAGGGACCTCTTCGGGTCACAGGTATATCAGT
GGTGGTGATGACGATGGCGGAGCCTCTTGGCCTGCTTCTCTAGCCCCTAC
TCTGCAAACCTTTTTCTCTCCGGCTGCTGCCTTCTGCATAAGAGGTCCCT
TAAAAAAATTGTAGCCCTGTCCCGCTGGGGCCTGGTACCTTTTGTGCCCT
GGTTTGGAGGGAACACACCTTTCTCCCCCGCGTCCCTGCTGTGGGTAGGT
GAAATCGTTCCCCCCCTAAGGCCCCCTCACAACAAAATATT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAGGGAAAGGAATTTTGCA
CTTAGCCATGGTCGGGTTGGAAGCAAAGCCTTGGGCTTTTCCTGTCCCTA
GGTGCTGAGCCCCAATCCCCCTTTCCTCCTGAGAACTCATGTTGCTGCCC
TGGTTCTTTCTACAGCTCTGGGATTTAGGGGGAGCCAACTCTTGGCCTTC
CTTTGCTCCCTGACTGTCCTTACGTCCTCTCTGTTTAGAGTCTTATTTAT
TCTGCCCTTTTAACCAGTGCTGTGATGGATGAAGGCCAATCTTGTTTCCT
TTCATCTAGTACCTGGACCATTCTCCCTAGACCCTTGCCTTCCTCCCTGG
CCAACACATACTTGCAGTGTCAGATCTGGTACATGAATGGCCATTCTACC
CAGATAGGTTTTAGCTTATATATAGGACATCAGATTCCCTGGAATCCTTG
GTTCAGGAAGGTGCTTGGGAAAGGGGTGTAGCCAGAATATTTTTTCCCTG
GCAGCCCTATGGGGGAGTATCTAATAAATATTCTGAGCAAGGGTGGGGGT
TATTTTTTACCCGGGCTATTTCTAACCTTCCCAAGGTTCTTAAAATTGCA
AAAGAAATGTGTATAAAATGGACTACTCCCTATACTCGTCTCACTTTCTC
ACTTATCTTTTCTCCCTTTTTTTCTTTTTATGTCCTTCCTTCTTTCTTTT
GAATTTCTTGACAAGTTCTTTATAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_b18.b1 MSMg01no400_b18.b1 CHROMAT_FILE:
MSMg01no400_b18.b1 PHD_FILE: MSMg01no400_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:18 2005
         (498 letters)



>mm_chr1_174259639_174260536
          Length = 898

 Score =  957 bits (495), Expect = 0.0
 Identities = 495/495 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaataggctactttttctgttttcctcatccataaatagaaaaagggataactg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ggaattcaataggctactttttctgttttcctcatccataaatagaaaaagggataactg 732

                                                                       
Query: 64  tctcacaggattgtcacagaaattaaatgagattctgctggatggattagcagtaggagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tctcacaggattgtcacagaaattaaatgagattctgctggatggattagcagtaggagc 672

                                                                       
Query: 124 atgtagcagcagacctgtgcaactctgtgtctttccactgatggcatcataggctgctgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atgtagcagcagacctgtgcaactctgtgtctttccactgatggcatcataggctgctgc 612

                                                                       
Query: 184 tgggcaaggacctgttcatttcataatcgcctctacctagcccagtatgtggtgtttgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgggcaaggacctgttcatttcataatcgcctctacctagcccagtatgtggtgtttgag 552

                                                                       
Query: 244 ccccctaagtctgctgggttgatggtaagagctagcctagacttctctctctctctgttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccccctaagtctgctgggttgatggtaagagctagcctagacttctctctctctctgttg 492

                                                                       
Query: 304 gacatttgagggttttctcaactttttgctatgagcaaagtacatctcaaacctctttta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gacatttgagggttttctcaactttttgctatgagcaaagtacatctcaaacctctttta 432

                                                                       
Query: 364 tttacatcacctaatttgatctgcatcccaggtgaagccagcagaagagggctgtttgcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttacatcacctaatttgatctgcatcccaggtgaagccagcagaagagggctgtttgcc 372

                                                                       
Query: 424 cacgcccacactctgagacagacagaatcactatggctcagagaagtgaagggacctctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cacgcccacactctgagacagacagaatcactatggctcagagaagtgaagggacctctt 312

                          
Query: 484 cgggtcacaggtata 498
           |||||||||||||||
Sbjct: 311 cgggtcacaggtata 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_b18.g1 MSMg01no400_b18.g1 CHROMAT_FILE:
MSMg01no400_b18.g1 PHD_FILE: MSMg01no400_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:18 2005
         (442 letters)



>mm_chr1_174064701_174065542
          Length = 842

 Score =  855 bits (442), Expect = 0.0
 Identities = 442/442 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaagggaaaggaattttgcacttagccatggtcgggttggaagcaaagccttgggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaagggaaaggaattttgcacttagccatggtcgggttggaagcaaagccttgggct 260

                                                                       
Query: 61  tttcctgtccctaggtgctgagccccaatccccctttcctcctgagaactcatgttgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcctgtccctaggtgctgagccccaatccccctttcctcctgagaactcatgttgctg 320

                                                                       
Query: 121 ccctggttctttctacagctctgggatttagggggagccaactcttggccttcctttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctggttctttctacagctctgggatttagggggagccaactcttggccttcctttgct 380

                                                                       
Query: 181 ccctgactgtccttacgtcctctctgtttagagtcttatttattctgcccttttaaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgactgtccttacgtcctctctgtttagagtcttatttattctgcccttttaaccag 440

                                                                       
Query: 241 tgctgtgatggatgaaggccaatcttgtttcctttcatctagtacctggaccattctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgtgatggatgaaggccaatcttgtttcctttcatctagtacctggaccattctccc 500

                                                                       
Query: 301 tagacccttgccttcctccctggccaacacatacttgcagtgtcagatctggtacatgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagacccttgccttcctccctggccaacacatacttgcagtgtcagatctggtacatgaa 560

                                                                       
Query: 361 tggccattctacccagataggttttagcttatatataggacatcagattccctggaatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggccattctacccagataggttttagcttatatataggacatcagattccctggaatcc 620

                                 
Query: 421 ttggttcaggaaggtgcttggg 442
           ||||||||||||||||||||||
Sbjct: 621 ttggttcaggaaggtgcttggg 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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