Query= MSMg01no400_c04.b1 MSMg01no400_c04.b1 CHROMAT_FILE:
MSMg01no400_c04.b1 PHD_FILE: MSMg01no400_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:20 2005
(549 letters)
>mm_chr1_81999495_82000444
Length = 950
Score = 1040 bits (538), Expect = 0.0
Identities = 547/550 (99%), Gaps = 1/550 (0%)
Strand = Plus / Plus
Query: 1 gcaggttaagcatggagataactcaaagacccctgtggtgctctgaaataaatagaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaggttaagcatggagataactcaaagacccctgtggtgctctgaaataaatagaattt 260
Query: 61 ttctggcagtgtggtctgcattactacttgtacatagtcacactttactctctacctatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctggcagtgtggtctgcattactacttgtacatagtcacactttactctctacctatg 320
Query: 121 gctccctgtcattcattccttggcttaaattcaaatctgtgttgctagaatttactgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctccctgtcattcattccttggcttaaattcaaatctgtgttgctagaatttactgaaa 380
Query: 181 tagtctttaccagatataatgaattgggtcccagatggacagatcattctatctactgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtctttaccagatataatgaattgggtcccagatggacagatcattctatctactgag 440
Query: 241 cagagcatatagaataaaaaaaaa-tgtattgaccccaagagtggcccagctcaaaagcc 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagcatatagaataaaaaaaaaatgtattgaccccaagagtggcccagctcaaaagcc 500
Query: 300 cagaatccttcagatcaatgaacaaagtatcttgtgaacacaggaggaaaatggtccata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaatccttcagatcaatgaacaaagtatcttgtgaacacaggaggaaaatggtccata 560
Query: 360 cagttgggggttaactccattaggaaggacacctcatggtgtttggtgacatgtgaaaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagttgggggttaactccattaggaaggacacctcatggtgtttggtgacatgtgaaaca 620
Query: 420 ctggctgtctgtggggctggctcactactgtgttctctacctcaacactgctgggatggg 479
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ctggctgtctgtggagctggctcactactgtgttctctacctcagcactgctgggatggg 680
Query: 480 tgtgtcaccttcacctctgtcctctttccagtgctcatcttttcacagtcatcccaacgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgtcaccttcacctctgtcctctttccagtgctcatcttttcacagtcatcccaacgt 740
Query: 540 cctgcagtag 549
||||||||||
Sbjct: 741 cctgcagtag 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space: 506660
Effective search space used: 506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_c04.g1 MSMg01no400_c04.g1 CHROMAT_FILE:
MSMg01no400_c04.g1 PHD_FILE: MSMg01no400_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:20 2005
(381 letters)
>mm_chr1_82134143_82134923
Length = 781
Score = 698 bits (361), Expect = 0.0
Identities = 376/381 (98%)
Strand = Plus / Minus
Query: 1 tatgtctgaagtacgtagtatctccaataatgtcttaccttcttttctggaagaaaccaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tatgtctgaagtacatagtatctccaataatgtcttaccttcttttctggaagaaaccaa 713
Query: 61 gggtaatggcaatagcttatattattttggggggtctctgacttcactgaccaacaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gggtaatggcaatagcttatattattttggggggtctctgacttcactgaccaacaactg 653
Query: 121 aaaaagaggattcctatacctgatactggattttttgctagataatctacatttttttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 652 aaaaagaggattcctatacctgatactggattttttgctagataatctacattttggggg 593
Query: 181 ggggggcattgaattgttccttcactatttagataggaagatgatctccctacaattcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggggggcattgaattgttccttcactatttagataggaagatgatctccctacaattcta 533
Query: 241 ggtactctcttctagtgctaatatcttttagagctactctttcttgatgttacatatgag 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 532 ggtactctcttctagtgctaatatcttttagagctaccctttcttgatgttacatatgag 473
Query: 301 tccaggctttatgttctagcctgtgaatgggattaagtttctgatgcctttctctatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tccaggctttatgttctagcctgtgaatgggattaagtttctgatgcctttctctatttg 413
Query: 361 taggttgattataaaaataga 381
|||||||||||||||||||||
Sbjct: 412 taggttgattataaaaataga 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
