Query= MSMg01no400_e13.b1 MSMg01no400_e13.b1 CHROMAT_FILE:
MSMg01no400_e13.b1 PHD_FILE: MSMg01no400_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:32 2005
(249 letters)
>mm_chr1_58646085_58646733
Length = 649
Score = 458 bits (237), Expect = e-133
Identities = 246/249 (98%)
Strand = Plus / Minus
Query: 1 ggaaaccctgtatcaaacactgcccaccccccactccaaaagttaaaccacagaacatta 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 449 ggaaaccctgtatcaaacactgcccaccccccactccaaaagttaaatcacagaacatta 390
Query: 61 tgttaaagatctctatattcgaaaaattaaaatgtagccactaaatacaagttaagacaa 120
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 389 tgttaaagatctccatattcgaaaaattaaaatgtagccacgaaatacaagttaagacaa 330
Query: 121 caacactcaaaatattaatttgcaatgtaagtttttgaaggaaaacatgaaactctatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caacactcaaaatattaatttgcaatgtaagtttttgaaggaaaacatgaaactctatac 270
Query: 181 tcatttctcttgcacaaatttctttaataaagccaatatattttatctaattacaatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcatttctcttgcacaaatttctttaataaagccaatatattttatctaattacaatatt 210
Query: 241 ttagaaaaa 249
|||||||||
Sbjct: 209 ttagaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no400_e13.g1 MSMg01no400_e13.g1 CHROMAT_FILE:
MSMg01no400_e13.g1 PHD_FILE: MSMg01no400_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:32 2005
(485 letters)
>mm_chr1_58444867_58445751
Length = 885
Score = 890 bits (460), Expect = 0.0
Identities = 480/488 (98%), Gaps = 6/488 (1%)
Strand = Plus / Plus
Query: 1 agagtaatgggcccaggaaactagtagcaaattttgctttagcactacttagtcacctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtaatgggcccaggaaactagtagcaaattttgctttagcactacttagtcacctta 260
Query: 61 gactgaggcaccagtggctgctcagggaagactaactgtgccatgtcctccaaatgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgaggcaccagtggctgctcagggaagactaactgtgccatgtcctccaaatgcctc 320
Query: 121 agcctctgccctgctcaggtcttcaaggcactgctcctccaaagaacacaaagtcccata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctctgccctgctcaggtcttcaaggcactgctcctccaaagaacacaaagtcccata 380
Query: 181 atatctgggagccctcccagacatgacttgtcttaggtttttggggtactgagtgttaaa 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatctgggagccctcccagacatgacttgtcttaggtttttggggtactgagtgttaaa 440
Query: 241 cccagga--ttnatgat-catgctaggtgagcactctaccaacggaggtacatccctagc 297
||||||| | | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaggacgt--aag-tacatgctaggtgagcactctaccaacggaggtacatccctagc 497
Query: 298 cccccaaaacagtttaatatgctttctgagtcagaccccaggactcagctgttgctatac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cccccaaaacagtttaatatgctttctgagtcagaccccaggactcagctgttgctatac 557
Query: 358 cagggtaacctggtttttagagcccacggtggaaaaagagaagcaactcctgaaagttgt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cagggtaacctggtttttagagcccacggtggaaaaagagaagcaactcctgaaagttgt 617
Query: 418 cttctgacttctataagcatgtggtggcatgcaagcacatgggatcacacgcgcatgcac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cttctgacttctataagcatgtggtggcatgcaagcacatgggatcacacgcgcatgcac 677
Query: 478 atgggctc 485
||||||||
Sbjct: 678 atgggctc 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
