BAC Information

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BAC

Clone NameMSMg01-400F23
Chromosome1 (Build37)
Map Location 184,321,337 - 184,321,656
singlet/doubletsinglet
Overlap genenone
Upstream geneCnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28
Downstream geneLOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400F23.T7 (MSMg01no400_f23.b1)MSMg01-400F23.TJ (MSMg01no400_f23.g1)
ACCAG500011AG500012
length804818
length of high quality
(start - end)
376 (78 - 453)375 (81 - 455)
definitionCHROMAT_FILE: MSMg01no400_f23.b1 PHD_FILE: MSMg01no400_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:39 2005CHROMAT_FILE: MSMg01no400_f23.g1 PHD_FILE: MSMg01no400_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCCG
CGGAATTCTGAAATGGTTGCTTCAGAAATTACACATTTATTAGAAGTAAT
GGCTATTATTGGGATACCTGCTCAATTAAGACTGACAGTGCCCCAATATG
TGTCTCCAGTAAAATGAAGCAATTCTGTAACTTAAAAAAAAAAAAACAAA
ACAAAGCTATTTTTAAAGATGGTTCTTTAACCTCCCTGTTAGCCCACCAC
CCACCAGAGGTAGTGGAACAGAAAGGATATGGGAAAAAGTGGAGCTGTTT
AGAAAGGTTCTTTGGAGCAACTCCTGTCTGTGTTGTCAGGAAATCAGTAG
ATCTGTTGACAGGTCAGCAGCGGCAGCTCAAACCACTTGCAAACTCTTCA
CGGATACCAGCAGTCCAGTGCAGGAGAGTCAGGATAGCAAACAGGAATCA
GCAGAGGTGGTACTATCTAGTAGAGACAACTAGGCCTCCAACTCAGCAGG
TCAGCAGGAAGGACCCAGAAGAAATGCCAGGAGAAATTCTCTGCTGGGCC
TCTCTCCCCCAAGGAAAAACACTCAAAAATGTGAGACCCACCACCTTTGA
AAATTTAGTTCTATAAAAAAGCCAGGTTCACCCCCCTTCACTTGGCCTTT
GAGGTCATTATTTCCCCCCAAAAACCATGGGGTCCCTCCCCAACTTTTTT
TTCACAAAAAAGGTCTGGTCTCCCCTAAAACAATCCTCTGGAAAACCCCC
CAAATTGTGTCGAGATATTATAACAATTTTATATCCCCCTCCCCCCCCTT
TTTT
NNCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGATTTAGAGTTCCTGTG
AAAATTAAAGGAGTCAGCTGTAGTAGAACACCATGGATCAACTGGCTCGA
AAGGATGAGGCAAGAGGATGTGAGTCTTAGGCCAGCCTAGGTTGGCCTTT
GTAGCATACACACGTAGTTTCTGAAGGTGGAGACAGGAGTGTTACTTAAG
CCTAGAAGTTCTGGGACGTAGTGCATGCTATGCTGACCAGATGTCCACAC
TAAATTTGGCATTAATTTGGTCACCTCCCAGGACTATTAAAGGTGGCTGC
ATATACTAAACATTCAGCCCATAGCCCAGCTCACACTCAGCTTCCATAGG
AGTAGCTGCTATTATGATCACACTGACAATGTCATTTTCCTCACTAGGGA
CCACTCTTACCAGTGTTGACAATGTTGTAATANAAAACAAGTCTTCTGGA
CAAGTCAGACTCTCTCTATTCTTCAGGATCCCGGCCTCCTAGGACAAGGA
GCCCCGGACCTTCTTTAGTATCGTGTGGGGGGGCGTCCCCTCTTTCCCCC
ACTTTCTATTTCATTCTCCCGTCTATCCCCCCCCTTTCCACCCTTTATTT
TTTCCTTTTTTTTCTTCCCTTTTTCCTCTCTCATCTTCTTCCCTTCCCCT
TTCCTCATCCCTCCTTCTTTCCTCCCTCTCTCTCTCTTCCTTATTACCCT
CCTTCTTTATCTCATCTTTCTTTTTCTTTACTATATCTCTCTATTCTTTA
TTCTCTTCCCTTTGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_f23.g1 MSMg01no400_f23.g1 CHROMAT_FILE:
MSMg01no400_f23.g1 PHD_FILE: MSMg01no400_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:40 2005
         (375 letters)



>mm_chr1_184320882_184321656
          Length = 775

 Score =  596 bits (308), Expect = e-174
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 56  gatcaactggctcgaaaggatgaggcaagaggatgtgagtcttaggccagcctaggttgg 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gatcaactggctcgaaaggatgaggcaagaggatgtgagtcttaggccagcctaggttgg 716

                                                                       
Query: 116 cctttgtagcatacacacgtagtttctgaaggtggagacaggagtgttacttaagcctag 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cctttgtagcatacacacgtagtttctgaaggtggagacaggagtgttacttaagcctag 656

                                                                       
Query: 176 aagttctgggacgtagtgcatgctatgctgaccagatgtccacactaaatttggcattaa 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aagttctgggacgtagtgcatgctatgctgaccagatgtccacactaaatttggcattaa 596

                                                                       
Query: 236 tttggtcacctcccaggactattaaaggtggctgcatatactaaacattcagcccatagc 295
           ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 595 tttggtcacctcccaggacaattaaaggtggctgcatatacaaaacatttagcccatagc 536

                                                                       
Query: 296 ccagctcacactcagcttccataggagtagctgctattatgatcacactgacaatgtcat 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccagctcacactcagcttccataggagtagctgctattatgatcacactgacaatgtcat 476

                               
Query: 356 tttcctcactagggaccact 375
           ||||||||||||||||||||
Sbjct: 475 tttcctcactagggaccact 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)