Query= MSMg01no400_i10.b1 MSMg01no400_i10.b1 CHROMAT_FILE:
MSMg01no400_i10.b1 PHD_FILE: MSMg01no400_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:52 2005
(657 letters)
>mm_chr1_15550604_15551661
Length = 1058
Score = 1187 bits (614), Expect = 0.0
Identities = 641/650 (98%), Gaps = 1/650 (0%)
Strand = Plus / Plus
Query: 9 tctctaaat-taccctagtatctaaacagtatttacaaagtagaagaaagcctaatgttc 67
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctctaaatataagctagtatctaaacagtatttacaaagtagaagaaagcctaatgttc 268
Query: 68 ttgtatattattgaagtgtgagcttgtgatggagaactaactgtggtcaagtctcagtgg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgtatattattgaagtgtgagcttgtgatggagaactaactgtggtcaagtctcagtgg 328
Query: 128 aaggtagatcaggccagtagaaccgtaagccatgtgagcagaggattagggggagattca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaggtagatcaggccagtagaaccgtaagccatgtgagcagaggattagggggagattca 388
Query: 188 gaagcaggaggactaaccatgttcaaaagtaaatgtttgaagagactgacattcaataga 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaagcaggaggactaaccatgttcaaaagtaaatgtttgaagagactgacattcaataga 448
Query: 248 atattgcaaaaccagaggttagtctgaaatttcttactctttaggaaggtccaaggtcag 307
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 449 atattgcaaaaccagaggttagtctgaaagcccatactctttaggaaggtccaaggtcag 508
Query: 308 tttgtaaggtataaatctacattacaatataaaatcagaaggttacatgatgacccagag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tttgtaaggtataaatctacattacaatataaaatcagaaggttacatgatgacccagag 568
Query: 368 agtcctagtctgaaagaccagatggcaaaattcagaacttcaatccctaagggattcaag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agtcctagtctgaaagaccagatggcaaaattcagaacttcaatccctaagggattcaag 628
Query: 428 gagcaaactaagatctcgatgaagcaggcaaaacaaccatcaggaaatctaaaatataca 487
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gagtaaactaagatctcgatgaagcaggcaaaacaaccatcaggaaatctaaaatatacg 688
Query: 488 caaagacatgaggacaagagtgaaagaagagtccaacattgagatctaagggcagaaagg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caaagacatgaggacaagagtgaaagaagagtccaacattgagatctaagggcagaaagg 748
Query: 548 gtcatactgctagatcagtactccctagccaataagatacttacaggatctaaccagggc 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gtcatactgctagatcagtactccctagccaataagatacttacaggatctaaccagggc 808
Query: 608 cagaatgaactcagatccatagtgaatgccacccttgactaaatgaacct 657
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 cagaatgaactcagatccatagtgaatgccacccttgactaaatgaacct 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space: 678056
Effective search space used: 678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_i10.g1 MSMg01no400_i10.g1 CHROMAT_FILE:
MSMg01no400_i10.g1 PHD_FILE: MSMg01no400_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:52 2005
(589 letters)
>mm_chr1_15584017_15585003
Length = 987
Score = 994 bits (514), Expect = 0.0
Identities = 570/590 (96%), Gaps = 4/590 (0%)
Strand = Plus / Minus
Query: 1 tttatttactgtcacattgacttgaatagaagtcaggagactcatacttattcactccct 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tttatttactgtcacactgacttgaatagaagtcaggagactcatacttattcactccct 728
Query: 61 tagtgtgccagcatagagtatgctaaggcacgctcaaggcattgaacacacacttttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tagtgtgccagcatagagtatgctaaggcacgctcaaggcattgaacacacacttttaaa 668
Query: 121 ggactttactcagtcatacctttgattaaaatggttatagattttaattagttgccaaca 180
|||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 667 ggactttactcagttatacctttgattaaaatggttatcgcttttaattagttgccaaca 608
Query: 181 tgatataacatattctatctctgccactgtgcaaatgaacagtcggaagctgcagctgtt 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 607 tgatataacatgttctatctctgccactgtgcaaatgaacagtcggaagctgcaggtgtt 548
Query: 241 gtttcactctttgttgtggccaggacttcagctaggtctctttgccttagtcacatctac 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtttcactcgaggctgtggccaggacttcagctaggtctctttgccttagtcacatctac 488
Query: 301 tccttctgctacccagtgagtaaacacaagggtcacatttgcaaaattcacacttttgtg 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 t---tctgctacccagtgagtaaacacaagggtcacatttgcaaaattcacacttttgtg 431
Query: 361 atatgtatagtaagccaacacaataaggcatgatattgttgaggtcagccatgttgaagg 420
|||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||
Sbjct: 430 atatgtatagtaagccaacacaataaggcacgatattggtgaggtcaggcatgttgaagg 371
Query: 421 catctgtgagcactttttttttgttatattatttaaagaatcagaataaagatgagtttt 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 370 catctgtgagcactttttttttgttatactatttaaagaatcagaataaagatgagtttt 311
Query: 481 agtctgataggaacatgaattgctctggataacgagggg-aaatgggtaagttaagacat 539
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 310 agtctgataggaacatgaattgctctggataatgagggggaaatgggtaatttaagacat 251
Query: 540 cagtgggccaatggactgagctaagtctatttatcattgtttcccaaatc 589
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cagtgggccaatggactgagctaagtctatttatcattgtttcccaaatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 987
Length adjustment: 10
Effective length of query: 579
Effective length of database: 977
Effective search space: 565683
Effective search space used: 565683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
