Query= MSMg01no400_k03.b1 MSMg01no400_k03.b1 CHROMAT_FILE:
MSMg01no400_k03.b1 PHD_FILE: MSMg01no400_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:00 2005
(605 letters)
>mm_chr1_104081559_104082563
Length = 1005
Score = 944 bits (488), Expect = 0.0
Identities = 515/524 (98%)
Strand = Plus / Minus
Query: 5 gaattcatcaaaacttacatatggaaactaggggaccctactccttatggctgaagtatg 64
|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaatccatcaaaactcagatatggaaactaggggaccctactccttatggctgaagtatg 465
Query: 65 tgctgcttataaatttaggaagctgggaaagttacgtacacacatatgaccccaaccacc 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 464 tgctgcttataaatttaggaagctgggaaagttatgtacacacatatgaccccaaccacc 405
Query: 125 tccaagggacatttccaatccaatggtcacatagagaatcatggttaaattaaatgagtc 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tccaacggacatttccaatccaatggtcacatagagaatcatggttaaattaaatgagtc 345
Query: 185 aaaaaacaatactaaaagttatgactgtggaaaggaagtaataggaatgataggagatcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaaaaacaatactaaaagttatgactgtggaaaggaagtaataggaatgataggagatcc 285
Query: 245 attaggatggctaaaagataatggagagaacataaatataatactatcataagtgtatga 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 284 attaggatggctaaaagataatggagagaacataaacataatactatcataagtgtatga 225
Query: 305 aatttttgaacagcaataactaataaataaaatagtttaaatataaaaatattatttgtg 364
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 224 aatttttgaacagcaataactaataaataaaaaagtttaaatataaaaatattatttatg 165
Query: 365 tttttaactattaatttgtgtgttgagttggcctataaggaaggaatatgtgcctgaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tttttaactattaatttgtgtgttgagttggcctataaggaaggaatatgtgcctgaatt 105
Query: 425 gtgattggtgatgaagccaggcaccaactctaaaactcgcagtaacaatggcacctatat 484
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gtgattggtgataaagccaggcaccaactctaaaactcgcagtaacaatggcacctatat 45
Query: 485 gagctctgtgttactgacttaccatgtagcttttttcacaaagc 528
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 gagctctgtgttactgacttaccatgtagcttttttcacaaagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_k03.g1 MSMg01no400_k03.g1 CHROMAT_FILE:
MSMg01no400_k03.g1 PHD_FILE: MSMg01no400_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:00 2005
(553 letters)
>mm_chr1_103905793_103906745
Length = 953
Score = 692 bits (358), Expect = 0.0
Identities = 420/442 (95%), Gaps = 5/442 (1%)
Strand = Plus / Plus
Query: 1 tcctactctgcattcaagagtaaaagacaataaaaacaggttcaagatgactgaatcaga 60
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 201 tcctactctgcattcaagagtaaaagacaataataataggttcaagatgactgaatcaga 260
Query: 61 tagtgcaggagcaggtggattttgatacaagatcacacttgtgaatagttggtctgaata 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgaaggagcaggtggattttgatacaagatcacacttgtgaatagttggtctgaatg 320
Query: 121 ttgattgctgtatttataattaagttgcaactttatattaaaatttctgttcagatcagg 180
||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 321 ttgatagctgtatttataattaagttgcaattttatattaaaatttctgttcagaccagg 380
Query: 181 agataaagccaggttgcttgagttctggcctagaagtacacaaagtcaaggttgctccca 240
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 agataaagccaggttggtagagttctgtcctagaagtacacaaagtcaaggttgctccca 440
Query: 241 ataccacatattcagggcatcatggttcatgcctatagtcttggcattcaagagataaag 300
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ataccacataaacagggcatcatgcttcatgcctatagtcttggcattcaagagataaag 500
Query: 301 gcaagaaaattagatgtccaaa--gccatcaatggatatgcaggaagttagatgccaaat 358
|||||| | |||||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 501 gcaagagatttagatgt--aaaaggccatcaatggatatgcaggaagttagatgccagat 558
Query: 359 ttgattatgttaagcactctctcaaaatttttttcaatactttaaagaagatatgacaaa 418
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 559 ttgattatgttaagcactctctcaaaatatttt-caatactttaaagaagatatgacaaa 617
Query: 419 gattgaaagagtgataacaaag 440
||||||||||||||||||||||
Sbjct: 618 gattgaaagagtgataacaaag 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
