Query= MSMg01no400_n07.b1 MSMg01no400_n07.b1 CHROMAT_FILE:
MSMg01no400_n07.b1 PHD_FILE: MSMg01no400_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:16 2005
(540 letters)
>mm_chr1_124165058_124165998
Length = 941
Score = 992 bits (513), Expect = 0.0
Identities = 534/543 (98%), Gaps = 5/543 (0%)
Strand = Plus / Plus
Query: 1 cccaaggtgggatgtatcttcccttaacaattaacttaattaagacactcctccagagac 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cccaaggtgggatgtatcttcccttaacaattagcttaattaagacactcctccagagac 260
Query: 61 attcttataggccaatccagtataaacaaattccttgttgagactctcttcccaagtgat 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcctataggccaatccagtataaacaaattccttgttgagactctcttcccaagtgat 320
Query: 121 cctaaactatgtcaagttgacatacccaacattactatctgttgggctactctaatactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaaactatgtcaagttgacatacccaacattactatctgttgggctactctaatactt 380
Query: 181 gagtgggtggggagtacattttaaattcaaactgtaacaccacacaaatccctggccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gagtgggtggggagtacattttaaattcaaactgtaacaccacacaaatccctggcc--t 438
Query: 241 tt---atttttttctgtgctccatttccctaggtggtcattatattggaagaagtgtttg 297
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttggaatgtatttctgtgctccatttccctaggtggtcattatattggaagaagtgtttg 498
Query: 298 acaactgcccattgccacactgtctccgtctttgttggtatgtctttaagcaaactagtt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acaactgcccattgccacactgtctccgtctttgttggtatgtctttaagcaaactagtt 558
Query: 358 tccacttgtaaaaaaaaatggccctgtactttatagagatataccatatttgcctttgac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tccacttgtaaaaaaaaatggccctgtactttatagagatataccatatttgcctttgac 618
Query: 418 ggtcttaaaacaactctttcattataaagcacagaagtagctcccatattcctgtgcaca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggtcttaaaacaactctttcattataaagcacagaagtagctcccatattcctgtgcaca 678
Query: 478 aacatacaaatacttttcccctcgactagaatgtgctttttattatacactctaataatc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aacatacaaatacttttcccctcgactagaatgtgctttttattatacactctaataatc 738
Query: 538 atc 540
|||
Sbjct: 739 atc 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_n07.g1 MSMg01no400_n07.g1 CHROMAT_FILE:
MSMg01no400_n07.g1 PHD_FILE: MSMg01no400_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:16 2005
(306 letters)
>mm_chr1_124365654_124366359
Length = 706
Score = 569 bits (294), Expect = e-166
Identities = 303/306 (99%)
Strand = Plus / Minus
Query: 1 caagcaaaacacccatacatgaaacaaagttttacacatgttgttgaatcatgtttagac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 506 caagcaaaacacccatacatgaaacaaagttttacacgtgttgttgaatcatgtttagac 447
Query: 61 tagtattactaaggtttctagctaccaatttctgaacatctacttgagacaatatgaaaa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 446 tagtattactaaggtttctagctaccaatttctgaatatctacttgagacaatatgaaaa 387
Query: 121 aaggacacatttttaaaaataaaagcctactggaaatttgatctctatttttgtttttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaggacacatttttaaaaataaaagcctactggaaatttgatctctatttttgtttttat 327
Query: 181 tataaattgtttgacaatgtttcacagagattcttactgcaacaatgacaaaattatttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tataaattgtttgacaatgtttcacagagattcttactgcaacaatgacaaaattatttc 267
Query: 241 attagtactgtaggtcactggttctatacatcagccttttattttgtgtttcacattttt 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attagtactgtaggacactggttctatacatcagccttttattttgtgtttcacattttt 207
Query: 301 ggtaca 306
||||||
Sbjct: 206 ggtaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
