Query= MSMg01no400_o15.b1 MSMg01no400_o15.b1 CHROMAT_FILE:
MSMg01no400_o15.b1 PHD_FILE: MSMg01no400_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:23 2005
(246 letters)
>mm_chr1_132798173_132798818
Length = 646
Score = 406 bits (210), Expect = e-118
Identities = 232/246 (94%), Gaps = 12/246 (4%)
Strand = Plus / Minus
Query: 1 ctcacaaccatctgtaatggaatctgatgccctcttctggtgtgtctcaagccagctata 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 575 ctcacaaccatctgtaatggaatctgatgccctcttctggtgtgtctgaagccagctata 516
Query: 61 gtgtactcatatgcaataaataaataaataaataaataaataaataaataaataaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtgtactcatatgcaataaataaataaataaataaataaataaataaataaataaataaa 456
Query: 121 taaataaataaataaataaatcttttaaaaattactaattgtgaaaatactaaaacttga 180
||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taaat---------aat---tcttttaaaaattactaattgtgaaaatactaaaacttga 408
Query: 181 tataattgaacaaaagcaggcctagagcaatggctcagtggttaagagtatattctggca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aataattgaacaaaagcaggcctagagcaatggctcagtggttaagagtatattctggca 348
Query: 241 gggctg 246
||||||
Sbjct: 347 gggctg 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no400_o15.g1 MSMg01no400_o15.g1 CHROMAT_FILE:
MSMg01no400_o15.g1 PHD_FILE: MSMg01no400_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:23 2005
(245 letters)
>mm_chr1_132597039_132597683
Length = 645
Score = 474 bits (245), Expect = e-138
Identities = 245/245 (100%)
Strand = Plus / Plus
Query: 1 agtatgaccaaaggcgggacaacaaatggttcctaagtccccctttctcctccctttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtatgaccaaaggcgggacaacaaatggttcctaagtccccctttctcctccctttaag 260
Query: 61 gtcagtgcccagcaaagtactagacaaccactcagagtgaagactcacctccccaccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagtgcccagcaaagtactagacaaccactcagagtgaagactcacctccccaccagg 320
Query: 121 gtatcggtacagatacttctcttgatctcggagtgcaaattcctctgggtaccgttgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatcggtacagatacttctcttgatctcggagtgcaaattcctctgggtaccgttgctc 380
Query: 181 aatctctgaatatgtcatctcctcacacacgccctgcaaagagccataccagagttggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctctgaatatgtcatctcctcacacacgccctgcaaagagccataccagagttggga 440
Query: 241 tgtag 245
|||||
Sbjct: 441 tgtag 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
