Query= MSMg01no401_d20.b1 MSMg01no401_d20.b1 CHROMAT_FILE:
MSMg01no401_d20.b1 PHD_FILE: MSMg01no401_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:49 2005
(244 letters)
>mm_chr1_182528861_182529504
Length = 644
Score = 435 bits (225), Expect = e-126
Identities = 240/245 (97%), Gaps = 2/245 (0%)
Strand = Plus / Plus
Query: 1 ctgtccctcttccaactctccagacaggctacatgtttgggaaagggatctactttgccg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtccttcttccaactctccagacaggctacatgtttgggaaagggatctactttgccg 260
Query: 61 acatggtgtccaaaagtgcaaactactgccacacatctcagggagacccgattggcttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatggtgtccaaaagtgcaaactactgccacacatctcagggagacccgattggcttaa 320
Query: 121 tactgctgggagaggttgcccttggaaacatgtga-taacctggactctgaggccagggt 179
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 321 tactgctgggagaggttgcccttggaaacatgtgagta-cctggactctgaggccagggt 379
Query: 180 gtgcagagtggactagaagaagtcttcttggcttgtaagtgcagtagtagatggcagctc 239
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 gggcagagtggactagaagaagtcttcttggcttttaagtgcagtagtagatggcagctc 439
Query: 240 gaggg 244
|||||
Sbjct: 440 gaggg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no401_d20.g1 MSMg01no401_d20.g1 CHROMAT_FILE:
MSMg01no401_d20.g1 PHD_FILE: MSMg01no401_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:49 2005
(245 letters)
>mm_chr1_182719738_182720382
Length = 645
Score = 393 bits (203), Expect = e-114
Identities = 233/245 (95%), Gaps = 8/245 (3%)
Strand = Plus / Minus
Query: 1 tattgctctggattttgtcccaaattattcccttgatatgtttctttaacacattctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattgctctggattttgtcccaaattattcccttgatatgtttctttaacacattctctt 382
Query: 61 aatgttactaacgt----cttcttatttttttacctaaataaaatatcctaaacaatagt 116
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aatgttactaacgtcttacttcttatttttttacctaaataaaatatcctaaacaatggt 322
Query: 117 gtctgtggtaagctgatatattgggtttccacccccctctacttaagtaaaacaagtgtt 176
||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 321 gtctgtggtaagctgatatattggg-gtcc-cccccc-ctacttaagtaaaacaagtgtt 265
Query: 177 taatgatttaaaataaaacatcaggtatcttggtgtgtgtacccttgcagttctagcgtg 236
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 264 taa-gatttaaaataaaacatcaggtatcttggtgtgtgtacctttgcagttctagcctg 206
Query: 237 tgaga 241
|||||
Sbjct: 205 tgaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
