Query= MSMg01no401_n20.b1 MSMg01no401_n20.b1 CHROMAT_FILE:
MSMg01no401_n20.b1 PHD_FILE: MSMg01no401_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:35 2005
(418 letters)
>mm_chr1_61324539_61325356
Length = 818
Score = 743 bits (384), Expect = 0.0
Identities = 410/419 (97%), Gaps = 1/419 (0%)
Strand = Plus / Plus
Query: 1 tagactttgttatttccttcatggagtctgttcaggtatgtgtaactaatatgaatttgt 60
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tagactttgttatttccctcatggagtctgttcaggtatgtgaaactaatatgaatttgt 260
Query: 61 cgtgctatatcagtggtcttggaaaatccatcagcaatgcctccgatttctcctttggga 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgctatatcagtggtcttggaaaacccatcagcaatgcctccgatttctcctttggga 320
Query: 121 acatcccttcaaccttagaaaccaggtcacagtgattgacacatctgcgttcagaagtct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gcatcccttcaaccttagaaaccaggtcacagtgattgacacatctgcgttcagaagcct 380
Query: 181 ataagttggtcaaacttctccgtatccctcagagggtccaataactgatttaaagaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataagttggtcaaacttctccgtatccctcagagggtccaataactgatttaaagaactg 440
Query: 241 ttgtt-ctancttgaaattcttacatttctttttaaacaagacaccttgaatttttattt 299
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtttccatcttgaaattcttacatttctttttaaacaagacaccttgaatttttattt 500
Query: 300 tgtactgagcagcacaaattgtgtatcttatcctggtggttgctttaggatgcagtaacc 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 tgtactgagcagcacaaattgtgtatcttgtcctggtggttgctttaggatgcagtaacc 560
Query: 360 agcagcaatgaaagtcaattccagaactttctgagaagattgatctcattggagtggta 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcagcaatgaaagtcaattccagaactttctgagaagattgatctcattggagtggta 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_n20.g1 MSMg01no401_n20.g1 CHROMAT_FILE:
MSMg01no401_n20.g1 PHD_FILE: MSMg01no401_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:35 2005
(530 letters)
>mm_chr1_61531276_61532205
Length = 930
Score = 940 bits (486), Expect = 0.0
Identities = 516/526 (98%)
Strand = Plus / Minus
Query: 5 tcttctccctcccacctcatccccaaactctgctaagctgcattgtatcactgtagaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 tcttctccctcccacctcatccccaaactctgctaagctgcattgtatcactgtagaatt 834
Query: 65 accttgcatttcctgccctgtcataggaatgacatcgtacagtgtgtcctctttctgctg 124
||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct: 833 accttgcatttcctgccctgtcaaaggaatgacatcatacagtgcgtcctctttctgctg 774
Query: 125 ggcttcttccccccagtggaatgacttcagatgcatacatatcacccatctaacaagtcg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 773 ggcttcttccccccagtggaatgacttcagatgcatacatatcacccatctaacatgtcg 714
Query: 185 cccgttcctaagactgagcagttggttgcacatacagtacaatgtatttactcacctgcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cccgttcctaagactgagcagttggttgcacatacagtacaatgtatttactcacctgcg 654
Query: 245 tatgtgtttttgggtgggttccaggtctggccatgtctagacagcatccatgagcatgtc 304
||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 653 gatgagcatttgggtgggttccaggtctggccatgtctagacagtatccatgagcatgtc 594
Query: 305 tgtatataaagtctttgtatacacagatgatttcatttctgcccaggatctcagcctcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgtatataaagtctttgtatacacagatgatttcatttctgcccaggatctcagcctcca 534
Query: 365 caggaggaaggagaaaatgaggatcaaagtcaatgtacgataaaggaaaatctggcagat 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 533 caggaggaaggagaaaatgaggatcaaagtcaatgtaggataaaggaaaatctggcagat 474
Query: 425 gggctgaacaatgaaggaatgaatacagcagaaaacacacagtaggcaatctgagcctat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gggctgaacaatgaaggaatgaatacagcagaaaacacacagtaggcaatctgagcctat 414
Query: 485 gagtaccacatcctcagagttaaccaacctgaaatcagaaatataa 530
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gagtaccacatcctcagagttaaccaacctgaaatcagaaatataa 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
