TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGTCCCCAACTCCTCCAACTATCAGAAAGACATAGTTTTAATATATGA
GCACACATTTAATGATGCATGTCTATAAAGATGTCATGGTAAAACCCATT
ACTTTGTATAATAGCAAAACAAAAAGGCAAAAATAAAACAGGAAAAGTGG
CAGCATGCACTATAAAAGTAATTTTTATTCACCTGATGGAATTGTCCTCT
CTACTGATGAATAAGCTTGCCTTTTCTTGTTCTTTCTGTGCTCTGGCTGT
TTGGTTCAATTCAGCTAGCTGTTCTGGCTCAAACTCTTCTCCAAGCTTAC
TGACTTCTGGCTTCTGTCAGCTTCTCACTGAATTTCTCTGCTTGGACTCA
AACTAACTCTGGCAATTTGTTCTAATCTTCTGGCTCCATTTTACTCTCTG
GCTTGTTCTGTTTTCACTTGTGGCCTGTCTCTGTAAAATAGTCCCAGTAA
AATTGCCTTCCCCCCAGCACTGCTCTCTTTTTTTTTTTTTTTTTTTTTTG
GTGCTTACATCATTTATTTATTTATTTATTTATTATATGGAAGTACACTG
TAGCTGTCTTCAGACACTCCAGAAGAAGGAGTCAGATCTCGTTACAGATG
GTTGTGAGCCACCATGTGGTTGCTGAGATTTGAACTCCGAACCTTTCGAA
GAGCAGTCAGGTGCTCTTACCCACTGAACCATCTCACCAGCCCAGCACTG
CT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCAGAGCTACACGGAGAAA
CCCTGTTTTGAAAAACAAACAAACAAACAAACAAACAGAATGGAAAACAT
CTGTTTTGTTTTGAGGCAGGATCTTACTCTCTAGCTCAGTCTGACCTGAT
AATGATAATTCATTATGTAGATCAGGGTGGACTCAAACTTGTGCAGTCTG
TCAACGCCCTAGAGGGAGTGAGACCTGGGAGAATCAGCTGATAAATGAGG
CAGACTAAATTCTCATGCAATAGCCAACTTTATTCAGAGTATCAGACAAG
TTATACTCTGAGAGTTAAGAGGAGTCACACAAGTACAGTGACAATCACAA
GGACAAGCTGCGTGTGGGAAAACATGTTTTTACATAGAGGCACATAAGCA
AATAGCAATAGCCTGTTGTAAGGAGTAATCTGAAGTAACTTCTCATCCTG
CTACACCTAGGACACAAAACACATTTCAAGACCAATTTCATGTTTTTGAA
GAAATTGAAGTCTTTAGACTCCTCCTCCTCCTTCATCTTCTTCCTCTTAT
TTATTATTATTGGTGGAGTTTTCACAGACACTCAGCATTCTCCTTACATG
ACTCCATTCTTGGACTGTGTTCTAACATCCAAGTCTTTATTTTTTAATAA
CAAAATATCCAGAATGGTTTTGATTANATAACCCAATTGTCATCTGAG

Query= MSMg01no402_d06.b1 MSMg01no402_d06.b1 CHROMAT_FILE:
MSMg01no402_d06.b1 PHD_FILE: MSMg01no402_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:01 2005
         (541 letters)



>mm_chr1_15772513_15773453
          Length = 941

 Score =  859 bits (444), Expect = 0.0
 Identities = 476/488 (97%), Gaps = 6/488 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtccccaactcctccaactatcagaaagacatagttttaatatatgagcaca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtccccaaatcctccaactatcagaaagacatagttttaatatatgagcaca 264

                                                                       
Query: 65  catttaatgatgcatgtctataaagatgtcatggtaaaacccattactttgtataatagc 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 catttaatgatgcatgtctataaagatgccatggtaaaacccattactttgtataatagc 324

                                                                       
Query: 125 aaaacaaaaaggcaaaaataaaacaggaaaagtggcagcatgcactataaaagtaatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaacaaaaaggcaaaaataaaacaggaaaagtggcagcatgcactataaaagtaatttt 384

                                                                       
Query: 185 t-attcacctgatggaattgtcctctctactgatgaataagcttgccttttcttgttctt 243
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttattcacctgatgtaattgtcctctctactgatgaataagcttgccttttcttgttctt 444

                                                                       
Query: 244 tctgtgctctggctgtttggttcaattcagctagctgttctggctcaaactcttctccaa 303
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgtgttctggctgtttg-ttcaattcagctagctgttctggctcaaactcttctccaa 503

                                                                       
Query: 304 gcttactgacttct---ggcttctgtcagcttctcactgaatttctctgcttggactcaa 360
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcttactgacttcttctggcttctgtcagcttctcactgaatttctctgcttggactcaa 563

                                                                       
Query: 361 actaactctggcaatttgttctaatcttctggctccattttactctctggcttgttctgt 420
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 564 actaactctggcaatttgttctagtcttctggttccattttactctctggcttgttctgt 623

                                                                       
Query: 421 tttcacttgtggcctgtctctgtaaaatagtcccagtaaaattgccttccccccagcact 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttcact-gtggcctgtctctgtaaaatagtcccagtaaaattgccttccccccagcact 682

                   
Query: 481 gctctctt 488
           ||||||||
Sbjct: 683 gctctctt 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)