BAC Information

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BAC

Clone NameMSMg01-402E16
Chromosome1 (Build37)
Map Location 84,145,679 - 84,146,128
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream geneLOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402E16.T7 (MSMg01no402_e16.b1)MSMg01-402E16.TJ (MSMg01no402_e16.g1)
ACCAG501473AG501474
length735740
length of high quality
(start - end)
460 (43 - 502)409 (79 - 487)
definitionCHROMAT_FILE: MSMg01no402_e16.b1 PHD_FILE: MSMg01no402_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:08 2005CHROMAT_FILE: MSMg01no402_e16.g1 PHD_FILE: MSMg01no402_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTAAGGTTGCACTGCTGTTCCACTTGAATTCAAAGAACCTCAA
GAAAAGTGACATACAATCTTCAGAGAGAAGACAGAGTCATATCCTGAATG
GAAAGTAGGCAAGTGAGAAGGAAAGAAAACAGGGAGAACGTCATCTGCTT
CCTCATTTATGTTCAGTGCTCAAAGCAGGGAGCATGGCCCAGGAAAACAT
CCATCGCTCAGGATCTCCAGCTGCACTGAGAAGGTGCAGGATGACTTCTG
AGTAAAACCAGACTTGAGGCAGATGAACTCAGCTCCAAACAGGGTTTCTT
TCTTTGTTTTTGTTTTTTTTTATTATTATTATTAGATATTTTCTTTATTT
ACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCTGAAAACCCCCTA
TCCCCTCCCCTCTCCTCCTGCTCCCCAACCCATCCACTCCCATTCCTGGT
CCTGGCATTTTCCTATACTGGGGTATAGAACCTTCACAGGACCTAGGGCT
TCTCCTCCCATTGATGACCAACTAGGCCATCCTCTGCTACATATATAGCT
AGAGCTACTAGTTTCACCATGGGTTTTCTTTGATTGGCGGTATAGCCCCG
AGGAGCTCTGGGGGCACTGGGTAGTTCATACTGACGGTCCTCCTAAGGGG
TNTTCGGTCCTCCTCATTTCCCCTGGAAATATCCG
NTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTA
ATTGAGAGTTTTGCTGAGTATAGTAGCCTGGGCTAGCATTTGTGTTCTCT
TAGGGTCTGTATAACATCTGCCCAGGATCTTCTGGCTTTTATAGTCTCTG
TTGAGAAGTCTGGAGTAATTCTAATAGGCCTGCCTTTATATGTTGCTTGA
CCTTTTTCCCTTACGGCTTTTAATATTCTGTCTTTATTTAGTGCATTTGT
TGTTCTGATTATTATGTGTCTGGAGGAATTTCTTTTCTGGTCCAGTCTAT
TTGAAGTTCTGTAGGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGG
TATGGGAAGTTTTCTTCTATAATTTTTTTGAAGATATTTGCTGGCCCTTT
AAGTTGAAAATCTTCATTCTCATCTACTATTATCTGTAGGTTTGGTCTTC
TCATTGTGTCCTGGATTTCCTGGATGGTTTGAGCTAGGTTCTTTTTGCCT
TTTGCATTTTCCTTGATTGCTGTGTCCTTATTTCCCATGGAATCCTCCGC
ACCTACAATTCCTTTTCCATCCTCTGTATTCCCTTCGGCGAAGCTCTAAC
CTATTGTCCCTGAATATCTTCCCTAAGCTTTTTTATTCCCCTAGTTTTCT
CCTTTTTGCTTTTATCTTCCCTCGTTCTCCCTTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_e16.b1 MSMg01no402_e16.b1 CHROMAT_FILE:
MSMg01no402_e16.b1 PHD_FILE: MSMg01no402_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:08 2005
         (460 letters)



>mm_chr1_84145469_84146328
          Length = 860

 Score =  824 bits (426), Expect = 0.0
 Identities = 444/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattctaaggttgcactgctgttccacttgaattcaaagaacctcaagaaaagtgacat 70
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctaagggggtactgctgttccacttgaattcaaagaacctcaagaaaagtgacat 270

                                                                       
Query: 71  acaatcttcagagagaagacagagtcatatcctgaatggaaagtaggcaagtgagaagga 130
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 271 acaatcttcagagagaagacagagtcacatcctgaatgggaagtaggcaagtgagaagga 330

                                                                       
Query: 131 aagaaaacagggagaacgtcatctgcttcctcatttatgttcagtgctcaaagcagggag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aagaaaacagggagaacgtcatctgcttcctcatttatgttcagtgctcaaagcagggag 390

                                                                       
Query: 191 catggcccaggaaaacatccatcgctcaggatctccagctgcactgagaaggtgcaggat 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 catggcccaggaaaacatccatcgctcaggatctccagctgcactgagaaggtgcaggat 450

                                                                       
Query: 251 gacttctgagtaaaaccagacttgaggcagatgaactcagctccaaacagggtttctttc 310
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 451 gacttctgagtaaaaccagacttgaggcagatgaactcagctccagacagggtttctttc 510

                                                                       
Query: 311 tttgtttttgtttttttttattattattattagatattttctttatttacatttcaaatg 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttgtttttgtttttttttattattattattagatattttctttatttacatttcaaatg 570

                                                                       
Query: 371 ttatcccctttcctagtttcccctctgaaaaccccctatcccctcccctctcctcctgct 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttatcccctttcctagtttcccctctgaaaaccccctatcccctcccctctcctcctgct 630

                                         
Query: 431 ccccaacccatccactcccattcctggtcc 460
           ||||||||||||||||||||||||||||||
Sbjct: 631 ccccaacccatccactcccattcctggtcc 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)