Query= MSMg01no402_i18.b1 MSMg01no402_i18.b1 CHROMAT_FILE:
MSMg01no402_i18.b1 PHD_FILE: MSMg01no402_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:29 2005
(430 letters)
>mm_chr1_24238497_24239324
Length = 828
Score = 752 bits (389), Expect = 0.0
Identities = 423/441 (95%), Gaps = 13/441 (2%)
Strand = Plus / Minus
Query: 1 aagctaggtctacctatctgctctcctaggccttgccttcagaattgggaatcactagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aagctaggtctacctatctgctctcctaggccttgccttcagaattgggaatcactagat 692
Query: 61 ataaacagaggaaaacccacttagcttttaagataaagaacagtgtcaga---------- 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ataaacagaggaaaacccacttagcttttaagataaagaacagtgtcagaaagaagtatc 632
Query: 111 at-ttttttttcaacaactgtaaacttttatattaaccaattttttttaaaaatgtctta 169
|| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 631 atattttttttcaacaattgtaaacttttatattaaccaa--ttttttaaaaatgtctta 574
Query: 170 caaggtcaccccttgctcctgcttcaccttcttcaccagaggcaccctaaaattttaaga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 caaggtcaccccttgctcctgcttcaccttcttcaccagaggcaccctaaaattttaaga 514
Query: 230 taaaatgtcacatgtttttcagttctccgttcacagttcaactttaacctgtcaacattg 289
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 513 taaaatgtcacatgtttttcagctctccattcacagttcaactttaacctgtcaacattg 454
Query: 290 ataagcatttatgagcagccaaatgccccaaggatcattcaggagctctcaattccataa 349
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 453 ataagcatttatgagcagccaaatgccccaagggtcattcaggagctctcaattccataa 394
Query: 350 caacaggctaatcctatgagaaaagagtagaccggggaagccagagagaccgggcaggct 409
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 393 caacaggctaatcctatgagaaaagagtagaccagggaagccagagagaccgggcaggct 334
Query: 410 tcagctaattgagtttgaatc 430
|||||||||||||||||||||
Sbjct: 333 tcagctaattgagtttgaatc 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 828
Length adjustment: 9
Effective length of query: 421
Effective length of database: 819
Effective search space: 344799
Effective search space used: 344799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_i18.g1 MSMg01no402_i18.g1 CHROMAT_FILE:
MSMg01no402_i18.g1 PHD_FILE: MSMg01no402_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:29 2005
(481 letters)
>mm_chr1_24041616_24042497
Length = 882
Score = 835 bits (432), Expect = 0.0
Identities = 467/482 (96%), Gaps = 7/482 (1%)
Strand = Plus / Plus
Query: 1 acatgagagcatcactgtactaaggac-atatccgtcaaagagaacatgatgatttgcag 59
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 acatgagagcatcactgtactaaggacaatatccgtcaaagagaacatgatgatttgcag 260
Query: 60 cgacaacagcatataactagtcagacaacaatgtgagaagcaaagcttgcgtgctttctc 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 261 cgacaacagcatataactagtcagacaacactgtgagaagcaaagcttgcgtg------c 314
Query: 120 tttctctttccttttttgagtcagggtcttattctgtaaccttgcacttgctttgtactt 179
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttctctttccttttttgagactgggtcttattctgtaaccttgcacttgctttgtactt 374
Query: 180 catgttgatcacaagctcatggcaagcctgactctgttatccaggcgcatggataacaga 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 catgttgatcaaaagctcatggcaagcctgactctgttatccaggcgcatggataacaga 434
Query: 240 catgaactaccacgcccagctataataacctgatatagaagatccacctcaggcatggca 299
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 435 catgaactaccatgcccagctataataacctgatatagaatatccacctcaggcatggca 494
Query: 300 gcacaagcctttacttccagtattgagaggcagaagtggatctctgtgagtacaaggcca 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gcacacgcctttacttccagtattgagaggcagaagtggatctctgtgagtacaaggcca 554
Query: 360 gcatgatctacatgctgagttccaggacagctagagcagcataggaagactgtctcaaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gcatgatctacatgctgagttccaggacagctagagcagcataggaagactgtctcaaaa 614
Query: 420 aaagaaaaagaaagacgataccaaaaactgactaatccaactagctagctaatccccttc 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaagaaaaagaaagacgatacaaaaaactgactaatccaactagctagctaatccccttc 674
Query: 480 ca 481
||
Sbjct: 675 ca 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
