Query= MSMg01no402_j23.b1 MSMg01no402_j23.b1 CHROMAT_FILE:
MSMg01no402_j23.b1 PHD_FILE: MSMg01no402_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:35 2005
(271 letters)
>mm_chr1_142588499_142589169
Length = 671
Score = 495 bits (256), Expect = e-144
Identities = 265/268 (98%), Gaps = 1/268 (0%)
Strand = Plus / Minus
Query: 5 gaattc-ttttttttctcttaaatatataaaaatgtatttatttgtaaacagaaaaatgt 63
|||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gaattctttttttttttgttaaatatataaaaatgtatttatttgtaaacagaaaaatgt 540
Query: 64 taatcatatatcactaaattagagaacagtttgaaagtgtgtgtgtgtgtgtgtgtgtgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 taatcatatatcactaaattagagaacagtttgaaagtgtgtgtgtgtgtgtgtgtgtgt 480
Query: 124 gtgagtgtaatcatagaatatgcttaaaactaagggttcttactgatgtattttacctcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtgagtgtaatcatagaatatgcttaaaactaagggttcttactgatgtattttacctcc 420
Query: 184 tgatgtcatttactgaaatgaacagagagtcactattatggttggtattctgaagttaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgatgtcatttactgaaatgaacagagagtcactattatggttggtattctgaagttaat 360
Query: 244 tgctgttgtttaatgctgaggaaacatg 271
||||||||||||||||||||||||||||
Sbjct: 359 tgctgttgtttaatgctgaggaaacatg 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no402_j23.g1 MSMg01no402_j23.g1 CHROMAT_FILE:
MSMg01no402_j23.g1 PHD_FILE: MSMg01no402_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:35 2005
(588 letters)
>mm_chr1_142393393_142394380
Length = 988
Score = 1114 bits (576), Expect = 0.0
Identities = 585/588 (99%)
Strand = Plus / Plus
Query: 1 attatagtgtgctaatttgaaggtacagacacaacagtggaacatccgtattacagtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatagtgtgctaatttgaaggtacagacacaacagtggaacatccgtattacagtcac 260
Query: 61 tgaagtgctcaaacagaacctaaacagtaggtatattgtaagagcacagctatactctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagtgctcaaacagaacctaaacagtaggtatattgtaagagcacagctatactctga 320
Query: 121 gacagtacaaagttcattttgactccaaatgtatattgattctgaagtacagatttaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagtacaaagttcattttgactccaaatgtatattgattctgaagtacagatttaaca 380
Query: 181 tatgagacatgagaaaatgatggttgtaagctgtgatgtacagttttactaggacaaatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tatgagacatgagaaaatgatggttgtaagctgtgatgtacagttttactagtacaaatt 440
Query: 241 aatttctttccttcacatgacagttctaaaactataaaaatcttctacccaaatgatcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttctttccttcacatgacagttctaaaactataaaaatcttctacccaaatgatcag 500
Query: 301 gatttatttattttattttctcaataattgatgggaattaagtcagtgtctcgaaacacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttatttattttattttctcaataattgatgggaattaagtcagtgtctcgaaacacc 560
Query: 361 cacatttaagataccatgtgacaaatcaactttaaggttggtgaattttagccaacctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacatttaagataccatgtgacaaatcaactttaaggttggtgaattttagccaacctat 620
Query: 421 caattgtgaacattcaacttttgatcactttaacttcttattgagcttgatccctttaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caattgtgaacattcaacttttgatcactttaacttcttattgagcttgatccctttaat 680
Query: 481 tatgttttctgctagtgtgtatagcctttctcaattcactccaatttacgcaattgaatc 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 tatgttttctgctagtgtgtatagcctttctcaattcactccaatttaggcaattgaatc 740
Query: 541 acatatgcagtaaataccaaacatcttttcagttccatctagtggata 588
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 acatatgcagtaaataccaaatatcttttcagttccatctagtggata 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
