BAC Information

Click to search

BAC

Clone NameMSMg01-403C03
Chromosome1 (Build37)
Map Location 82,210,773 - 82,211,376
singlet/doubletsinglet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403C03.T7 (MSMg01no403_c03.b1)MSMg01-403C03.TJ (MSMg01no403_c03.g1)
ACCAG502116AG502117
length763735
length of high quality
(start - end)
604 (67 - 670)505 (77 - 581)
definitionCHROMAT_FILE: MSMg01no403_c03.b1 PHD_FILE: MSMg01no403_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:18 2005CHROMAT_FILE: MSMg01no403_c03.g1 PHD_FILE: MSMg01no403_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCA
GTCTATGCCAAACACAGGTGAGAAAGAACTTAACCACTAAGTATTTGCTG
CAATCCTCAACTTGAGAAGAAAATACCTTTGCAGCCTGTCAAGCTATTGA
TTTGGTGAGATTCCTGTTGCAAGGTCTTCCTTCCTCTTCCTCTTTCACCT
CTGAGGGGGAAAAAAAGTGTTGACTTGCTGCAAGGCAGAGTAGAGAAAGA
CTCCCTCTGTACAAAGAATTCCTGGCCTGAAGCTTGGAGATCCAGGTGGG
TCTGAGTGTTTGCCCAAGGCTTCCTTCCCGATTGCTTAACATCTTGCCCG
CCTTTCTGTAGACCATCATTGTCCTGGCTTTCTCTTGATGGTTCTAAGTT
AAATGCCAGAAGTCACAGGACACAAGGACCTGTTGAAGAAGTCTTCCTCA
AATGACCCACAGTATCCAATGGGAGACCACAAGCAAGCTACTTATTTTTC
TAAATACAAGCTGAAACTTCATGAAATGGGGACTCAGATGCCTCTACTAA
GACCCTTCTATTGCTGTTTCTGGACTCAGCAAAACCAACACAGAGGGAAG
GGGAGTAACTAGATGTAAAGGCCCCACCTGCTTGTCGCTGCTGTAAAGCA
GTGGTGGTCTCTGGAACTAAGAGAGTTTCTCAGCTGACTCTTTTTCTCGT
CCGTGCTTCTGTGATGGGGAATCTTTAAGATCTACTTGGTGGCACAAGAT
GAAGTTTCCGGAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCTACATGTGTATACCTTAG
AGCCCTAGATCTAGAACTCCTCAGATGTGATTAAGTTAAATGTGGCTTTC
AGATATCCACACATAGAAGAATGATTTTATACCTGCATTTCATATCATAG
ATGCACAAGGCAACTCAAAGCAGGTGGAAGAAAACCTAAGACCTAAAAAC
ACAAAACTACTAAAAGCAAAACGAAAGAACCAGAACTTGTGAGATAAGCT
CCACAATACTAGTTGGGATAAATATTATAAACAAACAAAAAAATAAACAC
ACACACATATATGTTGGGATATGACCTCCAATGCACAGACTTTAACAATG
TCAAAAACAGATAAATGTTATTTCAAACTTAAAAAACAAAGAACAAAAAA
GAACAACAAAACCTTCCATAACAAACAATTAATGAGATGAACAGACAACA
CAGGAATGGGGGAAATGTCCAGAAACCATGGATATAAGGGGTTAACATCT
ACAATATATATTAACATCTGGTACTTGAGCAACTCAACATTGAGAAGACA
ATTGGCCCAATGCAAAGATGGGAAAGGATCTGAGATGTCTCANAAACAGA
CATGCAAAGCAGCAACAAGTATTTGAAAAAATCGTTCAGTGTCACCAACC
ATAAAGAAAATGCATTAAAACAAATCACCCATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_c03.b1 MSMg01no403_c03.b1 CHROMAT_FILE:
MSMg01no403_c03.b1 PHD_FILE: MSMg01no403_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:18 2005
         (604 letters)



>mm_chr1_82210573_82211576
          Length = 1004

 Score = 1100 bits (569), Expect = 0.0
 Identities = 596/605 (98%), Gaps = 2/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgagaaagaacttaaccactaagtatttgctgcaatcctcaacttgagaagaaaatac 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgagaaagaacttaaccattaagtatttgctgcaatcctcaacttgagaagaaaatac 260

                                                                       
Query: 61  ctttgcagcctgtcaagctattgatttggtgagattcctgttgcaaggtcttccttcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgcagcctgtcaagctattgatttggtgagattcctgttgcaaggtcttccttcctc 320

                                                                       
Query: 121 ttcctctttcacctctgagggggaaaaaaagtgtt-gacttgctgcaaggcagagtagag 179
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ttcctctttcacctctgaggggggaaaaaagtgtttgacttgctgcaaggcagagtagag 380

                                                                       
Query: 180 aaagactccctctgtacaaagaattcctggcctgaagcttggagatccaggtgggtctga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagactccctctgtacaaagaattcctggcctgaagcttggagatccaggtgggtctga 440

                                                                       
Query: 240 gtgtttgcccaaggcttccttcccgattgcttaacatcttgcccgcctttctgtagacca 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gtgtttgcccaaggcttccttcccgattgcttaacatcttgcccgcctttctgttgacca 500

                                                                       
Query: 300 tcattgtcctggctttctcttgatggttctaagttaaatgccagaagtcacaggacacaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcattgtcctggctttctcttgatggttctaagttaaatgccagaagtcacaggacacaa 560

                                                                       
Query: 360 ggacctgttgaagaagtcttcctcaaatgacccacagtatccaatgggagaccacaagca 419
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacctgttgaagaagtcttccccaaatgacccacagtatccaatgggagaccacaagca 620

                                                                       
Query: 420 agctacttatttttctaaatacaagctgaaacttcatgaaatggggactcagatgcctct 479
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctacttattttcctaaatacaagctgaaacttcatgaaatggggactcagatgcctct 680

                                                                       
Query: 480 actaagacccttctattgctgtttctggactcagcaaaaccaacacagagggaaggggag 539
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actaaggcccttctattgct-tttctggactcagcaaaaccaacacagagggaaggggag 739

                                                                       
Query: 540 taactagatgtaaaggccccacctgcttgtcgctgctgtaaagcagtggtggtctctgga 599
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 740 taactagatgtaaaggccccacctgcttgtcgctgctgtagagcagtggtggtctctgga 799

                
Query: 600 actaa 604
           |||||
Sbjct: 800 actaa 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)