XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCTGCTCTGAGCCCCATTTTTAATGCAGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATATTGGATATAATGCAACTTGGTACACTG
TGCCATGTTACAATCGCTGAGAACACAGTACTTTTACAAAGGAAAGAGGA
AGAGAAAAGAACCTGAGAGAGGGAGGTTGCATTCTCGGGAGGAATAGAAG
GGGAGCAGTGAGGGGATATTATTGTAAGGAATGTGATCTATGAAAGGTTT
GCTTTTAGTGGAAAATACAGTATTTTACAGCTTATATGGGGTATTATTTC
AGCTTTAATTTTTAATTTTATAGAACTTAATTATAGATTATAACTTAATT
ACAATATTTTTATCTTCCCTTAAACCCACCAAGATACTCATTCTAACACT
CTTTTGAAATCATGTCCTATTTTTCATATATATATATATATATATATATA
TATGTATTATTTATTATATATTTATTATTTATTATATATTATGCATTATA
TATTATATATTATATAGGAATATATACTCTTANGAATATATATATATATA
TATTCCTACTCTNTCCATATCATGCTACTTTTATGCGCGTTTTCAGGGCT
AACCTTTAGACCCCGTCAGAATAATTGGTCCCCTCCCCTCCGGAATAATT
CTATTCTGTTTTCCCCTCCTTTTCCCGCCCACTAATTTCCAGCACTTTGC
CTTCTCTCCTGTGGACCTTTTTTCTTCTTTTCG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGTTTAGTTCTATATTCCATTAATTTTTTT
TAATTGGACCGTTTGGTTTTTGGTAGGTTAACATTTTGAGTTCTTTATAT
ACTTTGGATATTAGCCCTGTATTGGATATGGGGATCGTGAATATTTTTCC
CCATCTGTAGTTTACAGTTCACTGATTTTGTCAGGAAGCAGAGGAAGAGA
GGTAAGAGAGGGGAGGGAGAAGGGAGAGAGAGGTTTTTTTTTTNNNNNNN
NNNNTTTTTTTTTTTTTNNNNCNNNNNNNNNNNNTNNNNNNNNNNNNCTT
TTTTCCCCCCCCCTTCCTCCTCTTTCTTTTTTTTTCTCCTTTTTCCTTTC
CCCCCTTTCCCTCCTTTTTTTCCTCCCTTTTTCCCTTCCTCTCCCCTTTC
CTCCTTTCCCCCTTCCTTCCCTCTTTCTTCTCCCTTTTTCTCTTTTCTCC
CTTTTTCCTCCCCCTCCCCTTTTTCCCTCCCTCCCCTCTTTTTTCTCCGT
TTTTCCCCTTTTTCTTCTCCTGTCCCTCTCGTCTTTTTCTCTTCCTCTCT
CTCTTTTCTCCCTTCTTCTCTGTCCTTTTTTTGTTTTTTCCCCGGCCCTC
CCTTTTTTCGTTCGTTTCCCCCTTTTTCTTTCTTCTTCNCTGGTCTCGCT
CCCCGCTGCCTCTGCTCTCCCTTTTTTTTTCTCTTTTCCCCGGTTCCCCC
TCCCGTGCGCCCTTTTTCCCCCTTTTTCTCCTCCTTGTCCCTTCCCTTTC
CTTTCTCCCCG

Query= MSMg01no403_c17.b1 MSMg01no403_c17.b1 CHROMAT_FILE:
MSMg01no403_c17.b1 PHD_FILE: MSMg01no403_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:21 2005
         (539 letters)



>mm_chr1_113204895_113205833
          Length = 939

 Score =  949 bits (491), Expect = 0.0
 Identities = 527/545 (96%), Gaps = 10/545 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttctgctctgagccccatttttaatgcagttatttgattttctgaagtcc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttcagctctgagccccatttttaatgcagttatttgattttctgaagtcc 264

                                                                       
Query: 65  accttcttgagttctttatatatattggatataatgcaacttggtacactgtgccatgtt 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 accttcttgagttctttatatatattggatataatgcaacttgctacactgtgccatgtt 324

                                                                       
Query: 125 acaatcgctgagaacacagtacttttacaaaggaaagaggaagagaaaagaacctgagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaatcgctgagaacacagtacttttacaaaggaaagaggaagagaaaagaacctgagag 384

                                                                       
Query: 185 agggaggttgcattctcgggaggaatagaaggggagcagtgaggggatattattgtaagg 244
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggaggaggcattctcgggaggaatagaaggggagcagtgaggggatattattgtaagg 444

                                                                       
Query: 245 aatgtgatctatgaaaggtttgcttttagtggaaaatacagtattttacagcttatatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgtgatctatgaaaggtttgcttttagtggaaaatacagtattttacagcttatatgg 504

                                                                       
Query: 305 ggtattatttcagctttaatttttaattttatagaacttaattatagattataacttaat 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 ggtattatttcagctttaatttttaattttataaaacttaattatagattataacttaat 564

                                                                       
Query: 365 tacaatatttttatcttcccttaaacccaccaagatactcattctaacactcttttgaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacaatatttttatcttcccttaaacccaccaagatactcattctaacactcttttgaaa 624

                                                                       
Query: 425 tcatgtcctatttttcatatatatatatatatatatatatata----------tgtatta 474
           |||||||||||||||||||||||||||||||||||||||||||          |||||||
Sbjct: 625 tcatgtcctatttttcatatatatatatatatatatatatatacatatatatatgtatta 684

                                                                       
Query: 475 tttattatatatttattatttattatatattatgcattatatattatatattatatagga 534
           | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 tgtattctatatttattatttattataaattatgcattatatattatatattatatagga 744

                
Query: 535 atata 539
           |||||
Sbjct: 745 atata 749



 Score = 54.9 bits (28), Expect = 1e-11
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 442 tatatatatatatatatatatatatatg 469
           ||||||||||||||||||||||||||||
Sbjct: 667 tatatatatatatatatatatatatatg 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)