Query= MSMg01no403_g18.b1 MSMg01no403_g18.b1 CHROMAT_FILE:
MSMg01no403_g18.b1 PHD_FILE: MSMg01no403_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:42 2005
(492 letters)
>mm_chr1_168800217_168801109
Length = 893
Score = 816 bits (422), Expect = 0.0
Identities = 479/514 (93%), Gaps = 26/514 (5%)
Strand = Plus / Minus
Query: 5 gaattcttctcttgttaggaaacttgttctgaag-------------------------c 39
|||||||||||| ||||||||||||||||||||| |
Sbjct: 752 gaattcttctctagttaggaaacttgttctgaagcagtagaactgtggtgctcagcgaac 693
Query: 40 aagtgagcagtgtcttctcgtgagaaaaggaaccacagggcagaacaaagtgccattcgg 99
|||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 692 aagtgagcagtgccttcttgtgagaagaggaaccatagggcagaacaaagtgccattcgg 633
Query: 100 gagcccaactcttcctcttctacctcagcttggccgttgtgctcagtcttctggatggac 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gagcccaactcttcctcttctacctcagcttggccgttgtgctcagtcttctggatggac 573
Query: 160 ctagtgcttctgctagcctaggt-aaaaaaattttcctgtcccttgaagaaagcctagga 218
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 572 ctagtgcttctgctagcctaggtaaaaaaaatgttcctgtcccttgaagaaagcctagga 513
Query: 219 tagaaacttctatactcctcatggaatgtgaacattaaagagcaaacaatccgcagagaa 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tagaaacttctatactcctcatggaatgtgaacattaaagagcaaacaatccgcagagaa 453
Query: 279 gcatgcatcaacacacgggtgatttaaggactttccaggcagtgaaagtagcctaattcc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gcatgcatcaacacacgggtgatttaaggactttccaggcagtgaaagtagcctaattcc 393
Query: 339 aagtgtacaaggcgctttcttggtctggtcaactagacctcagtcccttctgtaccatgc 398
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 392 aagggtacaaggcgctttcttggtctggtcaaccagacctcagtcccttctgtaccatgt 333
Query: 399 actattattcagttctccttacctcagaaagctcagataattaaaacagttactgtttgc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 actattattcagttctccttacctcagaaagctcagataattaaaacagttactgtttgc 273
Query: 459 catttccaagaatccctcttgctattgaaatgat 492
||||||||||||||||||||||||||||||||||
Sbjct: 272 catttccaagaatccctcttgctattgaaatgat 239
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_g18.g1 MSMg01no403_g18.g1 CHROMAT_FILE:
MSMg01no403_g18.g1 PHD_FILE: MSMg01no403_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:42 2005
(417 letters)
>mm_chr1_168635603_168636419
Length = 817
Score = 799 bits (413), Expect = 0.0
Identities = 416/417 (99%)
Strand = Plus / Plus
Query: 1 aggactgcatttcagcaagtttacagtaggtatagcagcggttaggaagtgaggactctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggactgcatttcagcaagtttacagtaggtatagcagcggttaggaagtgaggactctg 260
Query: 61 catgtcccttagtgcattctgtccacttaaggctctttgcccttacacggagtatgacgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtcccttagtgcattctgtccacttaaggctctttgcccttacacggagtatgacgt 320
Query: 121 gttgttactacttaggttgtatgcccacgctcatgaacaatgatcacacttcacactacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgttactacttaggttgtatgcccacgctcatgaacaatgatcacacttcacactacc 380
Query: 181 aacagataatttcaccagatacacgtgatagtattgaggtcttcctggacatcaatgagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagataatttcaccagatacacgtgatagtattgaggtcttcctggacatcaatgagg 440
Query: 241 tcagccagccaaaaaaaaaaaaaaagtctatatttttgaaggaaatgaaatcacaaatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagccagccaaaaaaaaaaaaaaagtctatatttttgaaggaaatgaaatcacaaatgc 500
Query: 301 cgggcagtggtggcacacgcctttagtcccagcacttgagaggcagaggcaggcagattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgggcagtggtggcacacgcctttagtcccagcacttgagaggcagaggcaggcagattt 560
Query: 361 ctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctatac 417
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ctgagttcaaggccagcctggtctacagagtgagttccaggacagccggggctatac 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
