XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
AATCTGATTTATAAATACAGAATACATAAACATGAAGTTTAGACTTCAGA
GGTTCTAAGTCTCCTAGTGAATTATTTTAACCTTTCTACCTCTAAGAAAT
AGTATATGGAGGTAGTTGGTGTTAAAAAATCATTTATCTATATGCTGGCT
TATTTTGAAATTTTTTACATTGTAATTATAAAATAGTTACTAGCTTATGC
AGCCAACTTCAAATATTTAGTCATAAATAAACTGAATTGTATGACTAGTA
TCATTGATGTATAAGGGAATTTGAAAACAAAACAAGATTAACAAACCAAA
ATCTCTAAAAATAATTTTATATACTCTCTTAAGATCTTTATTATTGTTGT
TATCATAGTCATTGTCATCATCATGTCACCTGTATAATTAGTCTCAGTTG
TAAATTTCTCACAATCTAAAATAATCTGGAAAAGAGCCTCTCACTGCAGG
ATTGCCTAGATCAGGTTTGCTGTGGCAATATCTGTTGAAGAGAGTTTTGC
TTATAAAATGGAGGGGGGAAGACCTGCCCATTGTAGGTGACCCCATTCCC
TAAGCCAAGTTCCCGGATTGTATAAAAGCACAGGAAGTGAGTTGAGTATA
GTAGCACACGTGGTGCTACTCTCTTTTCTATATATACTGTGACCACTGTT
ACCTCTTTCTAGTTCCCCGCCTGATTTTTCCGTCCATGGCATATCGGTTT
CTCCCAATTGACCCTTTCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTACATGTGGATCTGAGGCAGCAGGGCAGGATC
AGGGAGACACTGGCCTGGCTTGAGCACCTAAAAACTCAAAGCCCTTCCCC
CATGACACAGTTCTCCACACTTATTCCAACAAGGTCACACCTCCTAATAG
TGTCACTCTCAATGGGGACAATTTTTATTCAAACCACCACAGAGGCATCT
TACATGTAGTATTATGCTTTTTGTTGGACAACTTGTAGCTTCTGGGAAGA
GTATTTTCTTCCTGTGTATGATCATTCTAAAATCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCGCTCTCTCGCTTCTTACAGGTACGCCACATTAAACACA
CAAATTCAAATATTTGAAGGTAGGATATGCACATGAGAAAGAACACAAGC
ATTTTTCTTTCTTGACCTTTAATTTACCTTACTCAGTATAATTATTTTTT
TCCTGTTCCACTGACTTACCTGCCAGTTTCATTTTGTTATAGCTGAGCGA
AATTGCATTGTGACTGCATTTTCACTATGAGGACCATTTAGGTTGTTTCC
AACTCCGGGGGATCATGAATTAGAGAGGCAACTACTACACATGACCCAGC
TGCATTTACAGTAACATGTATAATCCCCTTGGCCAAAACCCTGGTAAAAG
AAGGGTTGTTTTATATTACCATTTCTTTTTTTCGCCCTTTTAATTAACCC
CTCCCTCTTCATTTCTTTGGCGG

Query= MSMg01no403_k18.b1 MSMg01no403_k18.b1 CHROMAT_FILE:
MSMg01no403_k18.b1 PHD_FILE: MSMg01no403_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:02 2005
         (495 letters)



>mm_chr1_76489119_76490013
          Length = 895

 Score =  934 bits (483), Expect = 0.0
 Identities = 489/491 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaatctgatttataaatacagaatacataaacatgaagtttagacttcagag 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gaattccagaaactgatttataaatacagaatacataaacatgaagtttagacttcagag 636

                                                                       
Query: 65  gttctaagtctcctagtgaattattttaacctttctacctctaagaaatagtatatggag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gttctaagtctcctagtgaattattttaacctttctacctctaagaaatagtatatggag 576

                                                                       
Query: 125 gtagttggtgttaaaaaatcatttatctatatgctggcttattttgaaattttttacatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtagttggtgttaaaaaatcatttatctatatgctggcttattttgaaattttttacatt 516

                                                                       
Query: 185 gtaattataaaatagttactagcttatgcagccaacttcaaatatttagtcataaataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtaattataaaatagttactagcttatgcagccaacttcaaatatttagtcataaataaa 456

                                                                       
Query: 245 ctgaattgtatgactagtatcattgatgtataagggaatttgaaaacaaaacaagattaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctgaattgtatgactagtatcattgatgtataagggaatttgaaaacaaaacaagattaa 396

                                                                       
Query: 305 caaaccaaaatctctaaaaataattttatatactctcttaagatctttattattgttgtt 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 395 caaaccaaaatctctaaaaataattttatatactctcttaagacctttattattgttgtt 336

                                                                       
Query: 365 atcatagtcattgtcatcatcatgtcacctgtataattagtctcagttgtaaatttctca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atcatagtcattgtcatcatcatgtcacctgtataattagtctcagttgtaaatttctca 276

                                                                       
Query: 425 caatctaaaataatctggaaaagagcctctcactgcaggattgcctagatcaggtttgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 caatctaaaataatctggaaaagagcctctcactgcaggattgcctagatcaggtttgct 216

                      
Query: 485 gtggcaatatc 495
           |||||||||||
Sbjct: 215 gtggcaatatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)