BAC Information

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BAC

Clone NameMSMg01-404F13
Chromosome1 (Build37)
Map Location 193,178,717 - 193,178,897
singlet/doubletsinglet
Overlap genePpp2r5a
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik
Downstream geneLOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404F13.T7 (MSMg01no404_f13.b1)MSMg01-404F13.TJ (MSMg01no404_f13.g1)
ACCAG503037AG503038
length770759
length of high quality
(start - end)
184 (124 - 307)243 (61 - 303)
definitionCHROMAT_FILE: MSMg01no404_f13.b1 PHD_FILE: MSMg01no404_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:59 2005CHROMAT_FILE: MSMg01no404_f13.g1 PHD_FILE: MSMg01no404_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTCCGCTCAACGACCCACTATTTCTAGACAATCCGCGGAANTCATTCTA
TTCCCTGCTGCTTTTTGCAGGTGATCAGAGGACTGCTGAAATTTTGGTCA
AAAACATGCATTCACAAAGAGGTGAGTTTTAATAATAATAAAAATAAATG
TATTTACATTAAGACTTTGCAATCTTGACCTGCTCTGTGAACTGTACCCA
TTTCCTAATGTACCGATTTGCCTTGTCTACATTAGCATCATTTGTAAATT
TTTTAAAAGGAAAAAAATTTTTTTTAAACCTAGGTGATGTTTTTAGGAGA
AATTGAAGAGATCTTATATGTCATTGAACCAACACAATTCAAAAAAATTG
AACAGCCGCTTTTTAAGCACATATCCAAGTGCGTCTCCAGCTCTCATTTC
CAGGTACCAGCTTCCTTTCTCTGTGACATTCTGTTGTTGTGCCATCCTTT
TTCCCTGTGGATTTTGAGGCTTCTGGTGTCTTTTTAGGTTGCAGAAAGAG
CACTGCACTTCTGGAACAATGAATACATTCTTATTTCGATTGACCATAAT
ATTGATCACATCCTGTCTATCATGTTTGCCACCCCGCATAATACTTTCTA
AGAATCCTGTTACCATAAAGCTCCCTGTTGTTGTGATTTCCATTCACCTT
ACATCCTCCCATACTCCCTCTTACCCTTTCACCCCCCCGCTCTCTAACCC
CATCCTATCCTTTAACTCCATTGTTCAACCTCTACTCTTCAACAATTATC
TTTTTTTTTCTTTACCCCCN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTAGGGCTAAAGAAAAAACCTGTCTCCGTGGGATTCCCTA
ACTTTTCTTATGGTAAACCGTATCTGGATAAGACTGTCCTTTCTATCCTA
GTAAACAACTAACAGAAAAGCCCTAAGCAGTAGGCTCTGACTTTATAATG
CTAATTAGTGCTGAATAGGTAACTTCCTAGTTGAATTTTAAGTAGGGCGT
TGGAACCCTGGCTAAGTTTGACTGAACAAATTTGAAATACACTTTATTAA
GAATATTTTTGAGTAGATATTCCTCCGCATTTTTGGATGACAAGCAGGAA
ACAGGGAGAAGGGAGTAACAACCGGCTCCGTAGTACAAGGCCAATTGGCT
TTTTTAGGGTGGGAGGCAGTGAAGGGCTTGCCCTTCCAACAGTACGGTCT
CCAACCTCTCTCCCCCCTAATAATTAAGTTTAATAAGGCAACACTTAACT
GAGGTGATCAAATGATTTTCTCATCCATAGATGAGTGGGCTTTTAACCTT
GCCTTGGGTGGACATTGACCCGATTCCTCCCCTGGGTGCTATCACGACCC
ATACCTGTGGCTCTTGGTATTTTTTTGGGAGGGGAGGGAGAAGCTTTTAT
TTTTTTCGCTTTTAATTTTTAAAAAAAACCACCCTCCTCCAAACCTCGTT
TACCCTCCCAGAAATTTTATAAGTTTCAGTTTTGCCCTCCCCCTGCTATT
TTTTCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_f13.b1 MSMg01no404_f13.b1 CHROMAT_FILE:
MSMg01no404_f13.b1 PHD_FILE: MSMg01no404_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:59 2005
         (184 letters)



>mm_chr1_193178491_193179073
          Length = 583

 Score =  327 bits (169), Expect = 3e-94
 Identities = 179/183 (97%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   gttttaataataataaaaataaatgtatttacattaagactttgcaatcttgacctgctc 62
           |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||
Sbjct: 407 gttttaataataataaaaataaatgtatttacattaggac--tgcaatcttgacctgctc 350

                                                                       
Query: 63  tgtgaactgtacccatttcctaatgtaccgatttgccttgtctacattagcatcatttgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgtgaactgtacccatttcctaatgtaccgatttgccttgtctacattagcatcatttgt 290

                                                                       
Query: 123 aaattttttaaaaggaaaaaaa-ttttttttaaacctaggtgatgtttttaggagaaatt 181
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaattttttaaaaggaaaaaaaattttttttaaacctaggtgatgtttttaggagaaatt 230

              
Query: 182 gaa 184
           |||
Sbjct: 229 gaa 227


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 583
Length adjustment: 8
Effective length of query: 176
Effective length of database: 575
Effective search space:   101200
Effective search space used:   101200
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)