Query= MSMg01no404_k13.b1 MSMg01no404_k13.b1 CHROMAT_FILE:
MSMg01no404_k13.b1 PHD_FILE: MSMg01no404_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:24 2005
(474 letters)
>mm_chr1_51048129_51049000
Length = 872
Score = 870 bits (450), Expect = 0.0
Identities = 468/474 (98%), Gaps = 2/474 (0%)
Strand = Plus / Plus
Query: 1 gaaattacacatgcacgtataatcccctagtaatgtaggagatattgtcttattccatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaattacacatgcacgtataatcccctagtaatgtaggagatattgtcttattccatac 260
Query: 61 ttagagaaaggtgagtgccagcttaaatttaaaatatacaaaataaaggccattatgctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ttagagaaaggtgagtgccagcttaaatttaaaatatacaaaataaaggccattatgcat 320
Query: 121 ttggacatcacaatgcagagttgagaggttttatggaagataaaaggctacagatgagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggacatcacaatgcagagttgagaggttttatggaagataaaaggctacagatgagag 380
Query: 181 agcagcctctgaaaatagggaaaaaaagctcagcaattaaccttaagatgaagtagcttt 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 agcagcctctgaaaatagggaaaaaa-gctcagcaattaaccttaagatgaagtagcttt 439
Query: 241 cctttctcaccttgttcaactcatacttaagtctttaaatggaaaatgacttgtagttaa 300
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctttctcaccatgatcaactcatacttaagtctttaaatggaaaatgacttgtagttaa 499
Query: 301 cctttatgattcagaaaaccatttaattgtaattatagctaatccaattaaagatggatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctttatgattcagaaaaccatttaattgtaattatagctaatccaattaaagatggatt 559
Query: 361 ataataactgctgaattaataggtcatgaaacactgagtttaattatgagtgtatttatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ataataactgctgaattaataggtcatgaaacactgagtttaattatgagtgtatttatt 619
Query: 421 ttgaaaaaattactcttaaggtattatgtaattttaaaaaattattttgagctc 474
||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 ttggaaaaattactcttaaggtattatgtaattttaaaaa-ttattttgagctc 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 872
Length adjustment: 10
Effective length of query: 464
Effective length of database: 862
Effective search space: 399968
Effective search space used: 399968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_k13.g1 MSMg01no404_k13.g1 CHROMAT_FILE:
MSMg01no404_k13.g1 PHD_FILE: MSMg01no404_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:25 2005
(427 letters)
>mm_chr1_51209093_51209914
Length = 822
Score = 764 bits (395), Expect = 0.0
Identities = 418/429 (97%), Gaps = 9/429 (2%)
Strand = Plus / Minus
Query: 1 agagagcatcttatttatatgtagatgtagctatatgacattttcaaatgccagacattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agagagcatcttatttatatgtagatgtagctatatgacattttcaaatgccagacattt 563
Query: 61 gcatatgaaggtctctttcttcccctttcagtaaacagtctttcctattacttccaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcatatgaaggtctctttcttcccctttcagtaaacagtctttcctattacttccaaagc 503
Query: 121 aatgttcggaattaaattccctataaaagtttgttcttaaagtgtttttaaatgtccaga 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aatgttcagaattaaattccctataaaagtttgttcttaaagtgtttttaaatgtccaga 443
Query: 181 agagatgagaaattaaactcccaaactggaatccattagttttttttctttttctttttt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 442 agagatgagaaattaaactcccaaactggaatccattagttttttt-ctttttctttttt 384
Query: 241 gaggagtttttaaaaaa--gtatctataaatttatgatacacacacctatacatcttctg 298
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaggagtt---aaaaaaaagtatctataaatttatgatacacacacctatacatcttctg 327
Query: 299 tttgtgtagcttttcacaaaaaaattttgaaattttattaatacaggtaaaaatgtcata 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttgtgtagcttttcacaaaaaatttttgaaattttattaatacaggtaaaaatgtcata 267
Query: 359 agaggaaaacaagaggaggttacttttatatgaggacttgttctgcttctagagcaatga 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 266 agaggaaaacaagaggaggttacttttatatgaggactt---ctgcttctagagcaatga 210
Query: 419 cccctggtc 427
|||||||||
Sbjct: 209 cccctggtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 822
Length adjustment: 9
Effective length of query: 418
Effective length of database: 813
Effective search space: 339834
Effective search space used: 339834
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
