Query= MSMg01no404_p07.b1 MSMg01no404_p07.b1 CHROMAT_FILE:
MSMg01no404_p07.b1 PHD_FILE: MSMg01no404_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:48 2005
(426 letters)
>mm_chr1_120921713_120922538
Length = 826
Score = 721 bits (373), Expect = 0.0
Identities = 411/427 (96%), Gaps = 9/427 (2%)
Strand = Plus / Plus
Query: 1 aaacccggtctccaaggaagtggacagcatttcgggagacgatacttgttaagattggcc 60
|||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 201 aaacccggtctcgaaggaagtggacagcatttcgggagatgatacttgttgagattggcc 260
Query: 61 tttggctttcacttgcacacacctgcacactcacagtacctcccc-tctctctccacccc 119
||||| |||||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 261 tttggttttcacctgcacacacctgcacactcacagtacctccccctctctccccacccc 320
Query: 120 ctgcaagcatacattatggtaccatttttaccaatatagaaacagagcaaagataaacct 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ctgcaagcatacattatggtaccatttt-accaatatagaaacagagcaaagataaacct 379
Query: 180 aacagcagagccagcagactccaaccgtcctggacatgtccctgctgttgctcgctgccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacagcagagccagcagactccaaccgtcctggacatgtccctgctgttgctcgctgccc 439
Query: 240 tcacaaccttgccaaacctctcctcattccagggaacacagaatcttgagccacagaggg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcacaaccttgccaaacctctcctcattccagggaacacagaatcttgagccacagaggg 499
Query: 300 actgatttctcccactgctgaggcgagatccctcctgaacaccatgctttcttctttgcc 359
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 500 actgatttctcccactgctgag---a----cctcctgaacaccatgctttcttctttgcc 552
Query: 360 cagtacagtacagtgcccccttcttccaacccaaggctccacctacatccccccaagacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 553 cagtacagtacagtgcccccttcttccaacccaaggctccacctacatccctccaagacc 612
Query: 420 aatgaga 426
|||||||
Sbjct: 613 aatgaga 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_p07.g1 MSMg01no404_p07.g1 CHROMAT_FILE:
MSMg01no404_p07.g1 PHD_FILE: MSMg01no404_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:48 2005
(159 letters)
>mm_chr1_120997270_120997828
Length = 559
Score = 273 bits (141), Expect = 4e-78
Identities = 151/159 (94%), Gaps = 8/159 (5%)
Strand = Plus / Minus
Query: 1 attcatcaggtaggctggtgacttatgagtgatccctagggatcttcctgcctccgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 attcatcaggtaggctggtgacttatgagtgatccctagggatcttcctgcctccgtttc 245
Query: 61 cccaggactaggttttatgcctgcgcagtcatacctggcggttttttgtttgtttgtttg 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 244 cccaggactaggttttatgcctgcgcagtcatacctggcggttt--------tttgtttg 193
Query: 121 tttgtttgtttgtttgttttattttgtttttttttcagt 159
|||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tttgtttgtttgtttgttttattttgtttttttttcagt 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space: 83201
Effective search space used: 83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
