Query= MSMg01no405_a03.b1 MSMg01no405_a03.b1 CHROMAT_FILE:
MSMg01no405_a03.b1 PHD_FILE: MSMg01no405_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:52 2005
(546 letters)
>mm_chr1_151748619_151749563
Length = 945
Score = 951 bits (492), Expect = 0.0
Identities = 519/528 (98%), Gaps = 2/528 (0%)
Strand = Plus / Minus
Query: 20 aaacaaaacaaataaacaaacaaaccagaatataaatactgtcaattgctcacaaggtct 79
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacaaaacaaataaactaacaaaccagaatataaatactgtcaattgctcacaaggtct 502
Query: 80 atttatagagatttttaaaaagtagacacattgattttctgtatttcttttatatatttc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttatagagatttttaaaaagtagacacattgattttctgtatttcttttatatatttc 442
Query: 140 aaaacgaagaggtaataatattccatttttataaatattggtcagtcaggaatatgtaaa 199
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 aaaatgaagaggtaataatattccatttttataaatattggtcagtcaagaatatgtaaa 382
Query: 200 atttattgctttcaatagaaatgtagtattaagagggagaaaaaaaagactatttttgtg 259
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 381 atttattgctttcaatagaaatgtagtattacgagggagaaaaaaa-gactatttttgtg 323
Query: 260 tattaattattgagacttctaggggatatgtatatagcttacttgtctagaatggactaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tattaattattgagacttctaggggatatgtatatagcttacttgtctagaatggactaa 263
Query: 320 aattaaaaacaaaacaaaaacatgaaatccttaagggactatgaaatattattttagatt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aattaaaaacaaaacaaaaacatgaaatccttaagggactatgaaatattattttagatt 203
Query: 380 attttaaattaatttt-gagacaggttcttgctacatagacctggctgacatggaaccta 438
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 attttaaattaatttttgagacaggttcttgctacatagacctggctgacatggaaccta 143
Query: 439 ctttgtagagaagactggcctcaaacttccaatatctgcctgccctgccccttgatgctg 498
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 142 ctttgtagagaagactgccctcaaacttctaatatctgcctgccctgccccttgatgctg 83
Query: 499 gcattaaaggttttgtgttaccttacctggcctagaactttatatgat 546
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 gtattaaaggttttgtgttaccttacctggcctagaactttatatgat 35
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space: 501160
Effective search space used: 501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_a03.g1 MSMg01no405_a03.g1 CHROMAT_FILE:
MSMg01no405_a03.g1 PHD_FILE: MSMg01no405_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:53 2005
(550 letters)
>mm_chr1_151637158_151638107
Length = 950
Score = 978 bits (506), Expect = 0.0
Identities = 539/550 (98%)
Strand = Plus / Plus
Query: 1 cacattgactgaactattttggactttagtggcaaattgtatttgcagtatagatggtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacattgactgaactattttggactttagtggcaaattgtatttgcagtatagatggtct 260
Query: 61 gaaagcccttcacagagcttgcatattaaatatccttcatatcaaatatttacattatga 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagcccttcacagagcttgcatatcaaatatccttcatatcaaatatttacattatga 320
Query: 121 ttcataacagcagcaacattatagctatgaggtagaagcaaaagtaattttatggtcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcataacagcagcaacattatagctatgaggtagaagcaaaagtaattttatggtcaag 380
Query: 181 ggtcaccacaacatgaggaacaatattaaagggtggcagcattagaaaggttgaaaacca 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ggtcaccacaacatgaggaacaatattaaagggtggcagaattagaaaggttgaaaacca 440
Query: 241 gtggtctagaactacagaagaaaggagtcctttctctttaattataaacatttcaggatt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 441 gtggtctagaactacagaagaaaggagtcctttctctttagttataaacatttcacgatt 500
Query: 301 taaaacattaacagaacaatccaataaaccagtcaaggatgaaattgtccgctcttctaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 taaaacattaacagaacaatccaataaaccagtcaaggatgaaattgtccactcttctaa 560
Query: 361 cagttcatatctgttgtaattgatctcaaaacttaaagatttttaaaatttccccccaga 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 561 cagttcagatctgttgtaattgatctcaaaacttaaagatttttaaaatttccacctaga 620
Query: 421 gtgtatgcatgtcaatattaaaaaccaatatacttttctttgagggtattacactaatga 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 gtgtatgcatgtcaatattaaaaaccaatatacttttcgttgagggtattacactaatga 680
Query: 481 aaaggtattgtcaagtttacgattctctacacaaagttactctgtctcaggtctaacaac 540
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggtattttcaagtttaggattctctacacaaagttactctgtctcaggtctaacaac 740
Query: 541 tgtaaccatg 550
||||||||||
Sbjct: 741 tgtaaccatg 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
