Query= MSMg01no405_a13.b1 MSMg01no405_a13.b1 CHROMAT_FILE:
MSMg01no405_a13.b1 PHD_FILE: MSMg01no405_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:54 2005
(319 letters)
>mm_chr1_142192838_142193557
Length = 720
Score = 572 bits (296), Expect = e-168
Identities = 311/316 (98%), Gaps = 1/316 (0%)
Strand = Plus / Minus
Query: 5 gaattcacaaaat-ttctattatggattcattcattggacattacaggaatatacaaatg 63
||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 520 gaattcacaaaatattttattatggattcattcattggacattacagaaatatacaaatg 461
Query: 64 taattttattatgtaattgagcacattgcctcatgaacaacaaataatgccccaccagct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taattttattatgtaattgagcacattgcctcatgaacaacaaataatgccccaccagct 401
Query: 124 atatttcaaatttcgagtaagtctttctaatgttctagcattatactaggatactagagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atatttcaaatttcgagtaagtctttctaatgttctagcattatactaggatactagagc 341
Query: 184 tttgtttctgaactgccttccgagtcttgttgaagtagttactgaaacccaccatcaacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tttgtttctgaactgccttccgagtcttgttgaagtagttactgaaacccaccatcaacc 281
Query: 244 agctctaggaacatagttctactgtaggcttcttctgatagccacggcaattatacaaag 303
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 280 agctctaggaacatagttctactgtaggcttcagctgatagccacggcaattatacaaag 221
Query: 304 aaccatgtggatttgc 319
||||||||||||||||
Sbjct: 220 aaccatgtggatttgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_a13.g1 MSMg01no405_a13.g1 CHROMAT_FILE:
MSMg01no405_a13.g1 PHD_FILE: MSMg01no405_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:54 2005
(577 letters)
>mm_chr1_142068360_142069335
Length = 976
Score = 1100 bits (569), Expect = 0.0
Identities = 575/577 (99%), Gaps = 1/577 (0%)
Strand = Plus / Plus
Query: 1 ttgaggtgttctaactagacaggaacaagttctgttcattcctgtagtccatcagtcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaggtgttctaactagacaggaacaagttctgttcattcctgtagtccatcagtcaac 260
Query: 61 ataaacgtacaccaaacacatttgcttgaaataaataggaagttgttaatgaaagcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaacgtacaccaaacacatttgcttgaaataaataggaagttgttaatgaaagcagag 320
Query: 121 caggtgcttcttatatagggagcagagaagtgctttcaaaaggataactacattttcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtgcttcttatatagggagcagagaagtgctttcaaaaggataactacattttcaga 380
Query: 181 cagatgattcagcttaaaacttttaaaacgggggaagctgactgcttctacgaccaggtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cagatgattcagcttaaaacttttaaaacgggggaagctgactgcttctacgtccaggtg 440
Query: 241 aatgagtaaactcaattttcttctggtacttaaatatttactcagatttccacaaataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgagtaaactcaattttcttctggtacttaaatatttactcagatttccacaaataaa 500
Query: 301 acctgatcctatgtgtttgcaataacgtaattaacagttagtttttgctttataaaaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctgatcctatgtgtttgcaataacgtaattaacagttagtttttgctttataaaaacc 560
Query: 361 ctactttgttaatattctactttcttggatataaatgccaatttcaaatgtttttcagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctactttgttaatattctactttcttggatataaatgccaatttcaaatgtttttcagaa 620
Query: 421 acagaatgactgtgtaggtttgattatctaaaaacaagagttttacttaaactcaaggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagaatgactgtgtaggtttgattatctaaaaacaagagttttacttaaactcaaggga 680
Query: 481 gataactataattttgattgaactttcaagcaaacatctgctattttaataatcatgatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gataactataattttgattgaactttcaagcaaacatctgctattttaataatcatgatt 740
Query: 541 acgagggttttttttttctatacagattttaaagagt 577
|||||||||||||||| ||||||||||||||||||||
Sbjct: 741 acgagggttttttttt-ctatacagattttaaagagt 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space: 547722
Effective search space used: 547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
