BAC Information

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BAC

Clone NameMSMg01-405E08
Chromosome1 (Build37)
Map Location 186,064,748 - 186,064,986
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666649, 1700056E22Rik, Dusp10
Downstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405E08.T7 (MSMg01no405_e08.b1)MSMg01-405E08.TJ (MSMg01no405_e08.g1)
ACCAG503741AG503742
length784765
length of high quality
(start - end)
429 (52 - 480)241 (79 - 319)
definitionCHROMAT_FILE: MSMg01no405_e08.b1 PHD_FILE: MSMg01no405_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:12 2005CHROMAT_FILE: MSMg01no405_e08.g1 PHD_FILE: MSMg01no405_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACCATATTTCTGATGTCTAGATCTTGCAAACTTTTTTTC
CACCTCTTCTAAAATGTTCTCTGAACTTGGGGCTAGCGAAGGTGTTACAT
CATTGCTCTTTTAGGGCTAAGCAGTCCATAGTCACTTAAGCTGTGCACCT
TGACCAGTTGGTTGTGGCTCTATGTGTCAAGACCTCCCGCTGCAGTTGTA
AGGTGAGTTTGTATTTATGTATTTGTTATTTATTATTTAAGGATATCATA
GATCTATACAATATATTTTGATATTTATCCCACATTCATTCCCTCAACTT
CTCCCTAACTCTCCCCTAAAACATCCCTTAATAACTTTATGCCTTTTATT
TTGAAACCTTTGAGTCCATTTAGTGTCACCTGTATGTTCATGGGTGTGGG
TCTGTCCACTGGAGCATGGGCAACCTATCACGAACCAATACCCCTAAAGA
AAAATGATCCCTGATACTCAGGAGGCCTCAACTGCCCAATAAGACTTCCG
CTACCAGTGAGGCCTCCTGGGCTCCCCCCACAATCCATCCTGGAATGGTG
AATTGATTTGATCTTGATACAATCTTGTGCAGCAACCAAATATTGTGGTG
AAATAAGCGATTATCGCGTCCCGAAAAACCCCATTTTACCACGCTTTTAC
ATAAAGGGTCCCCACCTTTTTCATGGGGGTGCTTGGTCCACACATTCCTT
TGTGTTTTTAGTTCAACAACTTTTTTTCCAACCG
NNCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACATATGTGTGCCCTGGTGG
AACATGTGGAAGTCTGGGGACAACCTCTCTTCGACCTTGTCTTCTATAGT
GTCTTTAAAATAAATGAATCGCCATTACATTTATGTCTTTGTTATTCTCC
TCCCCCCTCTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGCATGC
ACTGCCGGTCTGGGATGCATCTGAAGGGACCGTACTGCAGATGGAAGAAG
GCTGAGATTGGGAATAATTCTCTTTTTGAAATAAACTGCAGTTTACCGGT
TAGCAAAATGGTATGCCTGGCCGTTTGGTTGCCATTGTTGTTTGGTTTTT
ATTATTTCTTTTCTTTTTCTCCGGATGACAATGAATTCCAGCTGCATCGT
TTATAATTATTGTGTGGAAAATGTTCACTTGTTTTTTAAATTTTTTTCAT
TTAATTCTCTGTTTTCTGATCTCCCAACCTTTTGATATGTTATTTTTGCA
ATCAACAGACCCTATATTTTTTTTATTCACTCGTATTTTTTATTCTATTT
TTTCCTCCGTACCTTTTTCCCACTCTTCTTATTATTTTATACCCTTATTT
TTCCGCTTTTTTTTTCTTTTTTGTTCATCCATCTTTATACTCCCCACATT
ATTACCACCTCTTTTCTCTCCCCTCTATACCCCCTCTTTTTATTTTCTAC
TATTTTTCAGTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_e08.g1 MSMg01no405_e08.g1 CHROMAT_FILE:
MSMg01no405_e08.g1 PHD_FILE: MSMg01no405_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:12 2005
         (241 letters)



>mm_chr1_186064548_186065188
          Length = 641

 Score =  397 bits (205), Expect = e-115
 Identities = 232/243 (95%), Gaps = 6/243 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacatatgtgtgccctggtggaacatgtggaagtctggggacaacctctcttcgacctt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 201 aaacatatgtgtgccctggtggaacatgtggaagtctgaggacaacctctcttggacctt 260

                                                                       
Query: 61  gtcttctatagtgtctttaaaataaatgaatcgccattacatttatgtctttgttattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttctatagtgtctttaaaataaatgaatcgccattacatttatgtctttgttattct 320

                                                                       
Query: 121 cctcccccctctgtgtgtgtgtgtgtgtgtgt--gtgcgcgtgtgtgtgcatgcactgcc 178
           |||||||||| |   ||||||||||||||||   | ||||||||||||||||||||||| 
Sbjct: 321 cctcccccct-t---tgtgtgtgtgtgtgtgcacgcgcgcgtgtgtgtgcatgcactgct 376

                                                                       
Query: 179 ggtctgggatgcatctgaagggaccgtactgcagatggaagaaggctgagattgggaata 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggtctgggatgcatctgaagggaccgtactgcagatggaagaaggctgagattgggaata 436

              
Query: 239 att 241
           |||
Sbjct: 437 att 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)