NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCCTGTACTGCCGCATATAAAGTTTGTGTGTCCAATGGGCCTC
TCTTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGTAGCTAG
AGTCAAGAGCCAGGGTACTGGCTAATTCATAATGTTGCACCTACAGGGTT
GCAGATCTCTTTAGCTCCTTGGATACTTTCTCTATCTCCTCCATTGGGGG
CCCTGTGATCCATCTAATAGCTGACTGTGAGCATCCACTTATGTGTTTGC
TAGGCCCCTGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAG
CAAAATCTTGCTAGTGTATGCAGTGGTGTCAGCGTTTGGAAGCTGATTAT
GGGGTGGATCCCTAGATAAGGCAGTCTCTAGATGGTCCATCCTTTTGTCT
CAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCA
ATTCTAANAAGGGGCACAGGGGCCCCACTTTTGGCTTCATTCTTCTCGAA
GTTCCTGCATTTGGGAAATCTGATCTTTAATCTTTGGGTAACAAAGTTTT
GGGGTAACACCCTTTATTCATGTCTAAACTAATGGGGGAAGCCCCTTTCC
ATTTGTACATCTCGCTTCTATAATTACTTTACAGTCCCCCCCACCTTTTT
TGTATAACCAAATCTACTTTTCTATACCCACCAAACACATTTACTTCTCC
TTTTGTTGAAAAATATTTTTCTTTAACTTCCCCCG

CCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACTTATAAATGATTTAATCT
TATAAAGGCAAAAGAAAACTTAATTTTCAGTTATAGAGTTCAACTAGAAC
TTTGCCAGCTAAGTGTTAGTTCTTCTCTTAAAAGTTTTATTAATAAGATC
AATGTTTGTATGATTTTTTTGCACAATTTTATTCTTGCACAATAGTTTTA
TATTTATGGATGAACTATATACTACAGAGATTTTGAAAGAGTCACTTTAA
TTTTCAGTTTTCAATTGCTTAATATTAATATACAGATTACTTACATGTTT
GCTATATTGTTCAATAATATGAATTTTACCACCTTGGTATATTTTCCTTT
TACTTCTATGTATTAATTTTGTTGCATATAGAATTATTGCTTTCACACTG
TAATATGACTATTTTAAATATTGTGTCCTTTTCCTTGGTATTATAAAATA
ATTTCACTAGCAATAATTCATTAATTATTATTCTGTGGAAATAGCATCTA
TTATGACATCTTCATTGCATTAATTTTTCAATTAAGTATTGCTGAGAATC
CTACATTAGTTAAAATTATCTGAACAAGTTTAATGAAATTGTCTTTCCTC
TAAAGGTGGTATAAACCTATTTTTACCTGTAGAATGTCCGGTTTCAAACC
AATAAATTTTTCTTGTTGTGGGTTGGGGAATGCCTGAAAGAAACACTTAT
ATTTCCCGGTGTTA

Query= MSMg01no405_g19.g1 MSMg01no405_g19.g1 CHROMAT_FILE:
MSMg01no405_g19.g1 PHD_FILE: MSMg01no405_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:24 2005
         (564 letters)



>mm_chr1_112687987_112688955
          Length = 969

 Score = 1004 bits (519), Expect = 0.0
 Identities = 556/569 (97%), Gaps = 5/569 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacttataaatgatttaatcttataaaggcaaaagaaaacttaattttcagttataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tttacttataaatgatttaatcttataaaggcaaaagaaaacttaattttcagttataga 710

                                                                       
Query: 61  gttcaactagaactttgccagctaagtgttagttcttctcttaaaagttttattaataag 120
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gttcaactagaaatttcccagctaagtgttagttcttctcttaaaagttttattaataag 650

                                                                       
Query: 121 atcaatgtttgtatgat--tttt-ttgcacaattttattcttgcac-aatagttttatat 176
           |||||| ||||||||||  |||| |||||||||||||||||||||| |||||||||||||
Sbjct: 649 atcaatatttgtatgattcttttcttgcacaattttattcttgcacaaatagttttatat 590

                                                                       
Query: 177 ttatggatgaactatatactacagagattttgaaagagtcactttaattttcagttttca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttatggatgaactatatactacagagattttgaaagagtcactttaattttcagttttca 530

                                                                       
Query: 237 attgcttaatattaatatacagattacttacatgtttgctatattgttcaataatatgaa 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 attgcttaatattaatatacagattacttacatgtttgctatattgttcaataatatgaa 470

                                                                       
Query: 297 ttttaccaccttggtatattttccttttacttctatgtattaattttgttgcatatagaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttttaccaccttggtatattttccttttacttctatgtattaattttgttgcatatagaa 410

                                                                       
Query: 357 ttattgctttcacactgtaatatgactattttaaatattgtgtccttttccttggtatta 416
            |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 409 atattgctttcacactgtaatacaactattttaaatattgtgtccttttccttggtatta 350

                                                                       
Query: 417 taaaataatttcactagcaataattcattaattattattctgtggaaatagcatctatta 476
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taaattaatttcactagcaataattcattaattattattctgtggaaatagcatctatta 290

                                                                       
Query: 477 tgacatcttcattgcattaa-tttttcaattaagtattgctgagaatcctacattagtta 535
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgacatcttcattgcattaattttttcaattaagtattgctgagaatcctacattagtta 230

                                        
Query: 536 aaattatctgaacaagtttaatgaaattg 564
           ||||||||||||||| |||||||||||||
Sbjct: 229 aaattatctgaacaaatttaatgaaattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 969
Length adjustment: 10
Effective length of query: 554
Effective length of database: 959
Effective search space:   531286
Effective search space used:   531286
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)