BAC Information

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BAC

Clone NameMSMg01-405H03
Chromosome1 (Build37)
Map Location 60,527,517 - 60,527,953
singlet/doubletsinglet
Overlap geneAbi2
Upstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1
Downstream geneRaph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405H03.T7 (MSMg01no405_h03.b1)MSMg01-405H03.TJ (MSMg01no405_h03.g1)
ACCAG503875AG503876
length760763
length of high quality
(start - end)		---437 (80 - 516)
definitionCHROMAT_FILE: MSMg01no405_h03.b1 PHD_FILE: MSMg01no405_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:26 2005CHROMAT_FILE: MSMg01no405_h03.g1 PHD_FILE: MSMg01no405_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGCATACACCTTAATTCAACATCGCNGATAGNGTGTTACTATGCTAA
TCTAAANAGCGCGGGTTTCTGAGGAAGTTCGAAGAGGGGTGCTTTCCNNN
NCTCCCTATTGTGGAGAAAAATTGGGGGCGGGGGGGGAGGCAGGGGGCAC
TCCCCCCTTATTATTAAATTTTAAAANTGCCTCTCCTCTNTAGAGATAGA
AANNGTGTGTATGTTAAGAGCGAGACGGGGGGGGCCCTAAAAAGGGGTGT
TTTTGGGTGGGGGGGGGAGAAACTAACNATTAAAATCTCTCCCCCCCCTC
TGTANAAAAATTTTTTTGAANNNCGGAAAAAAAAAAAATAAAAGNAGGGG
GGGGGGGGTTATTTAAATACTTTTTTTTTTTTTTTTAAAAAAAAAAAAAA
ATTCTCCCCCCCCCCCCTTTCTTCCCCCCTTCTCTCCTTTTTNTTTTTTT
TTTCCTTTTTTTTTTTCTTTTTTTTCCTCTCCTCCCTCCTTTTTTTCCCT
TTTATTACTTTTCTTCTCCCTCCNCCTTTATTTTTTTCTCCCTCTTTTCT
TCTTTTCTTCTCTTTTCTTCCCCTTTTTCTCTTTCCCCCTTTCTCTTTCC
TCTTCTCTTCTTCCATTTTATTTACTTNCCCCCACTTCTTTCCTTTATTT
TTTTTTTTATTTATATATTTTATATTTTTTATCTTTTATCTATCAACTTT
TATTTATTTTTCCTTTCCTTCTTTTTATTATTACTTCATTTAAGTGTGGA
GGATGGGGGG

TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGAAAACCCACTTGGTT
TTTATTTTGTGGTATATAAATAATTTGTGAAAAGCAAGTTCAATAATATG
AGATAAACATAAAAATGTACTAATAAACTTCAAAACTATAAACCCTGTAG
ACTGACTAAAAAACCTAAACAGAATAGATAATACAAGTAAATAAAGCTTT
AACTATAAGTAAAAATAAGCATGCCCTTTTTCTGAGCAGCAGGTCTCATT
TCTATGTATAGAAGTTTTCTCGTCCTTCCAGACGACCCCTGACACTTACC
CTTTTCCAAGTAAGCCCTTGGCGCCCACGGTGGGTCCTCTTCAGCGTACG
GATCGCTGTACTCAACCACAGCTGCTTCCTCCTCTTCATAATCTTCTGGA
GGAGGCGGTGGAGGGGGGGATTCATCAAAGACTGGCTCTTCCACAGGTGG
GGGTGGAGGTGGTGTATCCGAAACTAATATTGCATCTAGCCTGATTACTT
TGCACCATGTTAAGTTCCCACCTATTTGAACCTCCTATATTCACTCTCTA
TAATCCTCACCCTGGCTTATAATATCCCTTCCTAATGATGACCGATCCAC
TATTAATTTCCTCTCCACCTATGTTTTCATCTTACCATTACGACATTTTC
CCTTCCCTTCCGCGCCCCCTTTTATCCCCCTCTATATTTTTTTTTTTTAT
ATTACCCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_h03.g1 MSMg01no405_h03.g1 CHROMAT_FILE:
MSMg01no405_h03.g1 PHD_FILE: MSMg01no405_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:26 2005
         (437 letters)



>mm_chr1_60527317_60528153
          Length = 837

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggaaaacccacttggtttttattttgtggtatataaataatttgtgaaaagcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 caaaggaaaacccacttggtttttattttgtggtatataaataatttgtgaaaagcaagt 578

                                                                       
Query: 61  tcaataatatgagataaacataaaaatgtactaataaacttcaaaactataaaccctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcaataatatgagataaacataaaaatgtactaataaacttcaaaactataaaccctgta 518

                                                                       
Query: 121 gactgactaaaaaacctaaacagaatagataatacaagtaaataaagctttaactataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gactgactaaaaaacctaaacagaatagataatacaagtaaataaagctttaactataag 458

                                                                       
Query: 181 taaaaataagcatgccctttttctgagcagcaggtctcatttctatgtatagaagttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taaaaataagcatgccctttttctgagcagcaggtctcatttctatgtatagaagttttc 398

                                                                       
Query: 241 tcgtccttccagacgacccctgacacttacccttttccaagtaagcccttggcgcccacg 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcgtccttccagaccacccctgacacttacccttttccaagtaagcccttggcgcccacg 338

                                                                       
Query: 301 gtgggtcctcttcagcgtacggatcgctgtactcaaccacagctgcttcctcctcttcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtgggtcctcttcagcgtacggatcgctgtactcaaccacagctgcttcctcctcttcat 278

                                                                       
Query: 361 aatcttctggaggaggcggtggagggggggattcatcaaagactggctcttccacaggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatcttctggaggaggcggtggagggggggattcatcaaagactggctcttccacaggtg 218

                            
Query: 421 ggggtggaggtggtgta 437
           |||||||||||||||||
Sbjct: 217 ggggtggaggtggtgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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