BAC Information

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BAC

Clone NameMSMg01-405K09
Chromosome1 (Build37)
Map Location 172,697,610 - 172,697,895
singlet/doubletsinglet
Overlap geneAtf6
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405K09.T7 (MSMg01no405_k09.b1)MSMg01-405K09.TJ (MSMg01no405_k09.g1)
ACCAG504030AG504031
length738736
length of high quality
(start - end)
286 (321 - 606)495 (78 - 572)
definitionCHROMAT_FILE: MSMg01no405_k09.b1 PHD_FILE: MSMg01no405_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:42 2005CHROMAT_FILE: MSMg01no405_k09.g1 PHD_FILE: MSMg01no405_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCATATTTGCGGCGCTAATAGATCACTATTCAAGAGGACCGCGGA
ATCATTTGTTCCCCAAACTGTATTTTAATTGCTATTTAAATTTCTTCCCT
GAGCTTGTATCTGGAAAATATATTTTAGACTCTGGACTTATCCTTAAAAT
GGGTATGAATATTTGGCTCTTCTAACCCATGCAGTTTAGATATATAAGCT
GTTTTAGGGGAGACTTTATTTTCACAGTAAAATCCTGAGCTCTAGCAAGG
TAAAGAAAGTTTATTCTTTTCTAGCCAGACTCAATTATGTTATTAAAAAG
CACAACAGTGAATCCTTTTAGGAAGACATCACCCACTCCCCATCTCACTC
AGGTCTCTGTTTCCCTGGTAAGGTGCTCCGTCTGCTTCAGAAAAGTACCA
GGGACTCTGCGTCCATCCCAGTGTCAGGGCATCTGGATGTAATGCATCTA
ACTGTACACTGGTGTGCAATGGACAGTACTAGGCCGGGTACTGCCTAGGT
TTTCATCCAACATCAGTCATCTAAGCTTTAAAATATCTGCTCTTTATATA
ATATAGCCATCGTCTTTCACATGTTCCATTTACTCTTAAACTGTCAAACT
GTATGCCAGACTGAAATAAATTGTCCTAATCCCCAGGCATGCCTTTTACT
ATGAAAATATGAAAGCCCTTTGTACCTAAAGAATCCTGCTGTTTGCATTT
CTCTCCCCGTCCTAAACTATTGTCTATTAGAATTGGGG
CTTTTCGATGATATGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAGGCTTCTTATTGAAGCAA
GAAGGAACGTGCCAAAGCAGGATTTGAGACCTGAGTGTGTAAACCTCATA
GATACAGGGTTGTGTAACAGTTTCCTTTGAAATTGAAACATTCTGTCCAG
CGTCCAGCAGGGAAGGTCTTTAAACTGGAAGGTAAACAACTCCAAGAAGT
TTCAGGAAGTCCCTGAAACTGGCCAGATCCACCAGGCCCCTCCCTGCCAG
AGTATAAACAAGAAAATCATATTATCTCAAGTAACTTGAAGCTGAGCTGC
AAAAGCAGTCTCTCGGAGGAGATAAACTGCAAAGACTCAGACCAGACCTA
GAAGCAGCAGAAACCAGCTAAGCTGCCAGGAAGAGGTTTAGATCAGATCA
GAGTCACTTGGAAAGGACACTCTCCAACCTGTTGAGCTGCCTGTGGGCTT
CGAAGTGTACTCCAGGTCCCCAGCTTTTGTGCGCTGTCACCAATACTGGT
CTGGGCCTTGATGATGCAGCTGTCTTTGAGACATTTCTGGTCCTGTAGGC
AGCCTCTCACCCATTGTCCTGTAAGTAATTGCAGTAAAACCCATAATCTA
GCGTATCTTTGTCGCTATTCCGCACTTTGTCCCGCACTGAGATTCCCACC
TGGCATGAACACATGTTTTTCCGCCTTCCCACTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_k09.b1 MSMg01no405_k09.b1 CHROMAT_FILE:
MSMg01no405_k09.b1 PHD_FILE: MSMg01no405_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:42 2005
         (286 letters)



>mm_chr1_172697410_172698095
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaagacatcacccactccccatctcactcaggtctctgtttccctggtaaggtgctccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggaagacatcacccactccccatctcactcaggtctctgtttccctggtaaggtgctccg 427

                                                                       
Query: 61  tctgcttcagaaaagtaccagggactctgcgtccatcccagtgtcagggcatctggatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctgcttcagaaaagtaccagggactctgcgtccatcccagtgtcagggcatctggatgt 367

                                                                       
Query: 121 aatgcatctaactgtacactggtgtgcaatggacagtactaggccgggtactgcctaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aatgcatctaactgtacactggtgtgcaatggacagtactaggccgggtactgcctaggt 307

                                                                       
Query: 181 tttcatccaacatcagtcatctaagctttaaaatatctgctctttatataatatagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttcatccaacatcagtcatctaagctttaaaatatctgctctttatataatatagccat 247

                                                         
Query: 241 cgtctttcacatgttccatttactcttaaactgtcaaactgtatgc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cgtctttcacatgttccatttactcttaaactgtcaaactgtatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)