NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTCTATTCCTTTGCTGAAAGTGTTTTACTTTGCTTTTGTTTT
GAAGAATAATTTGTTGCTGAGAGAGTTTATCTGGCCACAGGATTTAGGTT
GATAATGACTTTCTTGCAGAACTCAGAAGATCTGCCCACCTTCTATCATC
TGTCATCATCTCTTCAAAGGTCTCCGACCAACAGAGCCTGGAGGTGCACA
CCTTTGATCCAACCACTCAGGAGTCAGAGGCAAGAGGAATAGTGAGAATT
TGAGGCTAGCCTCAATTGTATTGATTTCCAGAGAGGCCCTGTTTCTTTTC
TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTT
TCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTG
TAGACCAGGCCGGTGTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAA
GTGCTGAGATTAAAGGCGTGTGCCACCATCTTCCGGCGAGGTCCTGTTTC
ACATTTTAAAGCATGTTAAAATCTCCAGCCAGCCCAAGCAGGTTTTTCTT
TGTTAACAACTTATATTATTCCTAAAGTTGCTTTTACTATGCCTTTAACT
TTGACCTCTGGAGTTTTACTAAAATATATCTACCTGTTAAATTTCTTTTA
TTTCTTCTCGCCCCAAACATTGTGGTTCTTACTCGAACTCATCATTCCAG
GTTGGTCCTCTCTGCA

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCATTTCCTGCTTGTAGATCACAC
TCCCCTAACTGGGCCTCCTTGTCTGGCCTCGGTGAAAGAGGAGGCACCTA
GCTCTGCAGTGACTGATGTACAGGGGCCGGGAAGGGAGGGTGGGTAGGGA
ATGATAATGGGGGCTCCTTCTTTTCACATAACGTAGGATTAGTTTCAATT
ATTTTTCTTTCACTTTTTCTTTTCTTATTCTTCCCTTTACCTTTTTTTTT
TCTTTCCCCCCTTACTTTTTTTTTTTCCTTTCCTTATTATCTCCGTTTTC
TCTTTTTTTTTTTCATTTTCTCTCTTTTTTTTTTGTTTTTTTCTTTTCTC
TTTTCTTCCTTTTTTCTTTCCTTCCCTCTATTTCATTTCTTTTCTCTTCT
TTCCTCCCTTTTTTTTTTTTTTCCTTTCTTCACTTTTTTTTTTCTCCTTT
CCCCTTTCTTCTTCCCTTTTTTCCCTTCCCTCATCTTTTCCCTTTTTCCT
CCTTTTTTTCCCTCCTTTCTCTCTCTTTTTTTTTTCCTCCCACTTTTCTT
CTATCTCCCTTCCCTTTTTTTATCCCCTCTTTTTTCTCCCTTTACCATTT
CTTACGCCTCCCCTACCTTTTTTTATATTTCTTCTCCCTTCTTTTTTCTT
TTCACCCTTTCTCCCTCTTCATTATCCACTCTTTCCCTCGCTTTTTCATT
TCATTTCTCTCCCGACTCTCTTTATCCTCTCCTCTTTTTCTTATCCCTCC
CCCTCATATTATTTTCGTCCTCCTACGTTTTCTTTCTTTTTACTTCTTTC
TCTCCCTTCCCTCCC

Query= MSMg01no405_n15.b1 MSMg01no405_n15.b1 CHROMAT_FILE:
MSMg01no405_n15.b1 PHD_FILE: MSMg01no405_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:58 2005
         (492 letters)



>mm_chr1_161081303_161082195
          Length = 893

 Score =  808 bits (418), Expect = 0.0
 Identities = 483/532 (90%), Gaps = 46/532 (8%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcta--t-tcctttgctgaaagtgttttactttgcttttgttttgaagaata 61
           ||||||||||||  | |  |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattctttctaagtat--tttgctgaaagtgttttactttgcttttgttttgaagagta 262

                                                                       
Query: 62  atttgttgctgagagagtttatctggccacaggatttaggttgataatgactttcttgca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atttgttgctgagagagtttatctggccacaggatttaggttgataatgactttcttgca 322

                                                                       
Query: 122 gaactcagaagatctgcccaccttctatcatctgtcatcatctcttcaaaggtctccgac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaactcagaagatctgcccaccttctatcatctgtcatcatctcttcaaaggtctccgac 382

                                                                       
Query: 182 caacagagcctggaggtgcacacctttgatccaaccactcaggagtcagaggcaagagga 241
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 383 caacagagcctggaggtgcacacctttgatccaaccactcaggaggcagaggcaagagga 442

                                                                       
Query: 242 atagtgagaatttgaggctagcctcaattgtattgatttccagagaggccctgttt-ctt 300
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 443 atagtgagaatttgaggctagcctcaattgtattgagttccagagaggccctgttttctt 502

                                                                       
Query: 301 ttcttttcttttcttttcttttcttttcttttcttt------------------------ 336
           ||||||||||||||||||||||||||||||||||||                        
Sbjct: 503 ttcttttcttttcttttcttttcttttcttttctttcctttcctttcctttccttttctt 562

                                                                       
Query: 337 ----------------tcttttcttttcttttttcgagacagggtttctctgtatagccc 380
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcttttcttttcttttcttttcttttcttttttcgagacagggtttctctgtatagccc 622

                                                                       
Query: 381 tggctgtcctggaactcactttgtagaccaggccggtgtcgaactcagaaatccgcctgc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggctgtcctggaactcactttgtagaccaggccggtgtcgaactcagaaatccgcctgc 682

                                                               
Query: 441 ctctgcctcccaagtgctgagattaaaggcgtgtgccaccatcttccggcga 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctctgcctcccaagtgctgagattaaaggcgtgtgccaccatcttccggcga 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space:   425606
Effective search space used:   425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)