BAC Information

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BAC

Clone NameMSMg01-405P18
Chromosome1 (Build37)
Map Location 64,714,539 - 64,714,770
singlet/doubletsinglet
Overlap genenone
Upstream geneGm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik
Downstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405P18.T7 (MSMg01no405_p18.b1)MSMg01-405P18.TJ (MSMg01no405_p18.g1)
ACCAG504286AG504287
length790761
length of high quality
(start - end)
245 (71 - 315)497 (74 - 570)
definitionCHROMAT_FILE: MSMg01no405_p18.b1 PHD_FILE: MSMg01no405_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:08 2005CHROMAT_FILE: MSMg01no405_p18.g1 PHD_FILE: MSMg01no405_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAAATTTGCGGCGCTAAACGAATACTAAATCATCACCTGCGCGGAATT
CTCTTGGTTTGCACCACCTTGGTTATTGGTGATGAAAATTGTATAGGGTA
GATAGATGCAATGCAGGGCCATTGACTGTAGGTTCTGACGTTTGTTTTTG
TCACTTAATGAATATTCTTCAACTACACAACATCTTGAAAAGACTCATGA
TAAAAAGGACCACTAGTATGTTATATAAATACAATTTTAGTGTTAATTAT
ATGTGTAGTGGGCAAGTGGTATGTGTACATGTGTGCAGGTTCCTGAGAAG
GCCGAGGTACCTGTTCNCTGGTTTTGGAGTTACAGCGGCGTGCATCACCT
CATGTGTATGTTGACAACTGAACCCAGGGCCTCTGTGAATGCATAGGGTG
CTCTTAACTGCCAACCCATCTCCATAGCTTCAGTAGGTTATATTTTTCTA
TATAGAATATCACCAAGATTCTGGTTAAGTTGTGTTCACCCGTATATTTA
CTAACAGGCCTAATGCTTTTTTTTGTCTTTATACCCGATCCCTATCCCCT
GACTCTCATTTTATTTACCAATTTTTTTCATTTCAACCTCCCTTGATCCC
CTTCTTTCCTTTTGTCACTCCCCTCTTTAACTTACTTTTTTTTTACTTTC
TCCCTCCCCCTCTCTTTTTTCTTTCCTTGCTCAACATTTTCCCCTCACCC
CCTGTCTCCCTCCCCTTTTACCTCCTCCCCCCCCTCTTCCTCCTCCCTTT
TTTTGCCTCTTTCTTTATCCCTTTTTTTTTCTTTTTTCCC
CGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGAGATAGTACCTTCTTGACTTGTGT
GTGTTATTCTGGCCATATACCAAGTGACTTGGAAAGCTGCTAGCTTTGAG
TGAGACCTGGAACAGGAGTAGGCTCTTTAATACATCCAGGATGTTGGACA
AAATGATCCAGCAGACCTGATGCTACATGGAATGCCAGTGGCAGACAGGG
ATGGTGTTTGGAGCCTTTGGTAGGCCCACATTCATGAATGAGAGAAGAGA
CCTTTAGGACATTGGACCTTTACTCTACCATATCCGCTAAGGGCCATGAC
TAGTCTCCCTCTGACAAACAGCTTTTGGCATGCTATTGGGCTTTAGTGGA
AACTGAACATTTGACAGTGGACCATCCAGTTACCACACTACCTGATCTGC
CCATCATGTGCTGGGTGACCCACCAAATCATAAAATAGGGTGTGTACAGC
AGCAATCAATTATCAAATGGAAATGTATATTTTGAAGGAGCATCCAATAT
ATGGTATGGTCTCTCTCATAGCCCAGATCCATGGATCCAGGAATCAAGGT
GTGAAAAGGATATAGTTTCACTCACCATCGCCCCTAGTGTTCCACTGGAA
AAAATTTGCTCCCTATCCTGCGACCCTAGTTCGTCTGTCTTACAATATTT
GGTCTATACTGAGGTGTGTTTTTTGTTTCACCCTTATTTCCTTATTCCTT
GACTTGTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_p18.b1 MSMg01no405_p18.b1 CHROMAT_FILE:
MSMg01no405_p18.b1 PHD_FILE: MSMg01no405_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:08 2005
         (245 letters)



>mm_chr1_64714339_64714983
          Length = 645

 Score =  395 bits (204), Expect = e-114
 Identities = 225/232 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttattggtgatgaaaattgtatagggtagatagatgcaatgcagggccattgactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggttattggtgatgaaaattgtatagggtagatagatgcaatgcagggccattgactgta 373

                                                                       
Query: 61  ggttctgacgtttgtttttgtcacttaatgaatattcttcaactacacaacatcttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggttctgacgtttgtttttgtcacttaatgaatattcttcaactacacaacatcttgaaa 313

                                                                       
Query: 121 agactcatgataaaaaggaccactagtatgttatataaatacaattttagtgttaattat 180
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| 
Sbjct: 312 agactcatgataaaaaggaccatttgtatgttatataaatacaattttagtgttaattac 253

                                                               
Query: 181 atgtgtagtgggcaagtggtatgtgtacatgtgtgcaggttcctgagaaggc 232
           |||||| ||||||||||||| | |||||||||||||||| ||||||||||||
Sbjct: 252 atgtgtggtgggcaagtggtgtatgtacatgtgtgcagggtcctgagaaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)