BAC Information

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BAC

Clone NameMSMg01-406A07
Chromosome1 (Build37)
Map Location 37,784,490 - 37,784,874
singlet/doubletsinglet
Overlap genenone
Upstream gene4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik
Downstream geneTsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406A07.T7 (MSMg01no406_a07.b1)MSMg01-406A07.TJ (MSMg01no406_a07.g1)
ACCAG504312AG504313
length715746
length of high quality
(start - end)
385 (77 - 461)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no406_a07.b1 PHD_FILE: MSMg01no406_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:11 2005CHROMAT_FILE: MSMg01no406_a07.g1 PHD_FILE: MSMg01no406_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGTNATGGCAATATTGGTGTATCTCAACTCAAGTGTATGA
CAGAAACTTGAACGTCTTTCCGTTTAGTCCATGGGACAGAACGATGAAAC
CGTGGGGCCGGTCGCACCAGCTACATATGACAGACAGGAGCCATGCTTTT
TGTTTTTTGTTTTTTGTTTTGGATTGCCTGAAGTTTAGGGGCGCTACACT
CCCCTCCTGTCACTTGCCTTCCCCTTTGGCCTCAAAGGGGATTGTCCTAA
GCGAACATTTTCCTGAGTTTTTGTGCGGCTTGGGAGGGGACCAGTGAACA
GGTCTGTGTGGGCCTTTGTGAGAACTTGGGAATATGGCTCTGCGGTCCTT
TAGCTCAGCTGTGGTGCACATATACCCCATATTCTAGTATCCAACACAAC
ACAAACACACACTTCCACTAATCAATACTGGTGAATGCTGCTGCATACTT
TGGGTTAAACCACTGTACACTTGGTGAAAAACCTATTCCTAATAGGAAAT
GATTATGCCTACCTATCTCAAATAGTTTTAGAGTGTTTGTGTCCCTAAAA
ACTGATATTTGATTTTTGACCCTGAAAATCCCTTCGGCTCTTGTCTTGTT
TCTGCTTCTGTGCCGCTCGTCCTGTATTGAGATAATTTTTCGTCTCTTGT
TCTTTTTTTTCAACA
CCCCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCTAGAAATTCTTACGACTTCTCACTTTTCC
AGGTATCTGAAAAAGGAAGGAGATGAAAGGATTCTCCGTTGCCCGGCAGT
TCAGCAGTTAGGAGCTCACACTGTTCTCCCAGAGGTCAACACTTGGGTCT
CGGTGCCCACTGCCCCTGGACCTCCAGACCCAGGGTATCTGGCACCCTCT
TCTGGTCTATTCACACACCTGCACTAATGTGCACCCCCTCCCTCAAACAC
ACACACACACACACACACACTCTTTCTATTTTCACACGCACGCACATACA
TTACTAAAAGCAAATGTTTCTTTTCTCATTTTTATTTATTTATTTTATGT
ATAAGAGTACACTGTCACTGTCTTCGGACACTTTATAAAAGGGCTTCCTA
TCCCATTACAGTTGGTTGTGAGCCACTATTGTTTTTTTTTGTATACTATT
CTGTCATCTTTTGTCTATACTTTTTCTTTTTCTTTTGTTTTATTCTTCTT
TTCACCCTTTTTTTATTTTTTTTTTCTTCCGATTGTGCTTCCCCCTTTTT
CTATCTTAATCCACCATTCTTTGTTTATGATTCTTTTTTTCCCTTTATTT
TCTCCTTTTTCTTTTTTTTTCTTTTTTTCTTTGATTCATATTTATTTCTT
TCTTTTCGTAGGTCTCTCGTGTCATATTCCTTTATCACTCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_a07.b1 MSMg01no406_a07.b1 CHROMAT_FILE:
MSMg01no406_a07.b1 PHD_FILE: MSMg01no406_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:11 2005
         (385 letters)



>mm_chr1_37784290_37785074
          Length = 785

 Score =  714 bits (369), Expect = 0.0
 Identities = 381/385 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtatctcaactcaagtgtatgacagaaacttgaacgtctttccgtttagtccatggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtatctcaactcaagtgtatgacagaaacttgaacgtctttccgtttagtccatggga 260

                                                                       
Query: 61  cagaacgatgaaaccgtggggccggtcgcaccagctacatatgacagacaggagccatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaacgatgaaaccgtggggccggtcgcaccagctacatatgacagacaggagccatgc 320

                                                                       
Query: 121 tttttgttttttgttttttgttttggattgcctgaagtttaggggcgctacactcccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tttttgttttttgttttttgttttggattgcctgaagtttaggggtgctacactcccctc 380

                                                                       
Query: 181 ctgtcacttgccttcccctttggcctcaaaggggattgtcctaagcgaacattttcctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtcacttgccttcccctttggcctcaaaggggattgtcctaagcgaacattttcctga 440

                                                                       
Query: 241 gtttttgtgcggcttgggaggggaccagtgaacaggtctgtgtgggcctttgtgagaact 300
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacatgtgcggcttgggaggggaccagtgaacaggtctgtgtgggcctttgtgagaact 500

                                                                       
Query: 301 tgggaatatggctctgcggtcctttagctcagctgtggtgcacatataccccatattcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggaatatggctctgcggtcctttagctcagctgtggtgcacatataccccatattcta 560

                                    
Query: 361 gtatccaacacaacacaaacacaca 385
           |||||||||||||||||||||||||
Sbjct: 561 gtatccaacacaacacaaacacaca 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)