Query= MSMg01no406_e01.b1 MSMg01no406_e01.b1 CHROMAT_FILE:
MSMg01no406_e01.b1 PHD_FILE: MSMg01no406_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:30 2005
(266 letters)
>mm_chr1_76622241_76622908
Length = 668
Score = 499 bits (258), Expect = e-146
Identities = 265/268 (98%), Gaps = 2/268 (0%)
Strand = Plus / Minus
Query: 1 gtctaggtcaaatgcaaataaagggatatgcaaattgagatatacttgactacaaaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtctaggtcaaatgcaaataaagggatatgcaaattgagatatacttgactacaaaatca 409
Query: 61 gatgcttaaaaacatttcaggaaagtgaagttttcgtctcacaaaattcacccggtcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gatgcttaaaaacatttcaggaaagtgaagttttcgtctcacaaaattcacccggtcctc 349
Query: 121 attataatacgtttcccatttgtgccattcattcagcacactaaatgcatgatggggctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 attataatacgtttcccatttgtgccattcattcagcacactaaatgcatgatggggctc 289
Query: 181 tagttaagtagatttagaagctgattatactgcattaaatgtattcacttcaattttagc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cagttaagtagatttagaagctgattatactgcattaaatgtattcacttcaattttagc 229
Query: 241 aggatttttttt--cttaaaaggattac 266
|||||||||||| ||||||||||||||
Sbjct: 228 aggattttttttcccttaaaaggattac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 668
Length adjustment: 9
Effective length of query: 257
Effective length of database: 659
Effective search space: 169363
Effective search space used: 169363
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_e01.g1 MSMg01no406_e01.g1 CHROMAT_FILE:
MSMg01no406_e01.g1 PHD_FILE: MSMg01no406_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:30 2005
(447 letters)
>mm_chr1_76523982_76524828
Length = 847
Score = 803 bits (415), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Plus
Query: 1 ttagtaggaatgaatcacaaatgtcaatgttttaatgctactgtgggaagaaaagtacgc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagtaggaataaatcacaaatgtcaatgttttaatgctactgtgggaagaaaagtacgc 260
Query: 61 agggtaattgttttcaaatgtccttttaccatgaaaatgcttacttgccacacaattgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtaattgttttcaaatgtccttttaccatgaaaatgcttacttgccacacaattgaa 320
Query: 121 acctaaagttgatatgaaatctggccacattggtatattatttcacaaggagatttgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 acctaaagttgatatgaaatctggccacattggtatattatttcacaaggaaatttgttc 380
Query: 181 attattgttgtttttatttatttacacagggtctcactgtgccatctaagttgatcctga 240
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 atttttgttgtttttatttatttacacagggtctctctgtgccatctaagttgatcctga 440
Query: 241 actcctggtttcaatgatcctcccaactcagctcaagtgcctgggacttctgatgtatgc 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcctgggttcaatgatcctcccaactcagctcaagtgcctgggacttctgatgtatgc 500
Query: 301 ctgacatgactttttggctttatgaggatttctgaacttgactctgcagagttaaaatgt 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ctgacatgactttttggcttcatgaggatttctgaacttgactctgcagagttgaaatgt 560
Query: 361 gtcttgtctagtgtttgggcctttaaaaataaaactcaggtaccatagtccccatatgac 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 gtcttgtctagtgtttgggcctttaaaaataaaactcaggtgccatagtccccatatgac 620
Query: 421 actgaaaggtggagaccatggcctcta 447
|||||||||||||||||||||||||||
Sbjct: 621 actgaaaggtggagaccatggcctcta 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
