BAC Information

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BAC

Clone NameMSMg01-406G22
Chromosome1 (Build37)
Map Location 183,105,411 - 183,105,894
singlet/doubletsinglet
Overlap genenone
Upstream geneCabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4
Downstream geneWdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406G22.T7 (MSMg01no406_g22.b1)MSMg01-406G22.TJ (MSMg01no406_g22.g1)
ACCAG504629AG504630
length758751
length of high quality
(start - end)		486 (51 - 536)456 (77 - 532)
definitionCHROMAT_FILE: MSMg01no406_g22.b1 PHD_FILE: MSMg01no406_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:44 2005CHROMAT_FILE: MSMg01no406_g22.g1 PHD_FILE: MSMg01no406_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTTAAGTCTCTATCGAGTTTATCACAATGTCAGAGATTT
TCACATAATCCTGTCACCAGGTTCTTCCACCATAAACACTAGCTTTCTTC
ACCTTTCTACCACACTCACTTCATGGCAAATATACGAAACAGATGCTTAC
AGCAAATTGGCACAGTCAAGTACCAGTCTAGAGAGGGAGCGGCCAGTTAA
GACAGACTTGGAAACCGAACTCACCTAGCTACTATCAACACCTTTGCATA
GTTGTAACTCCACTCTAACAGGAGTTATGTTCTGGTCATGGCCCTCACCT
TCGGGGCACGCTCTTACCTCCCAGTGTTTTAAATGTACTTCAGAAGCAGT
GAACACGCGGATCTAGGTGCAGCTGGATACAAAACTGCCCTGATGGGTAC
AGCCCTCAGGGAGCATCATGCACATGCCACGTGGTACACTGTAACCACAT
CTGTAAACAGCTGTGGAGTCTGTGCCCACATGGTGTTAGTGATTGTTACT
GTAGACTGTGGTGTATGGATTAATGGCTTCAGGGTATATCAATCAAAAGA
TGGTTTTAACTGCACTGAGGTAAAGAGGAGATGCCACCTTAATTATATAC
AGTTATGAATGAAAATTTTTATTCCAGCTTAAAGTGGAAAAGAATTTTAT
TCCCCAAAAATGAGGACCCCATTAACGGGCACTTATTTTTTTTTTTAAAA
AGATTCAG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATTTTTCTCAACTCTTTTATTG
AATAAAATATATTTTATTTTTAATCAATCTTTTGACTGATAATTATAATT
TAAAAAATTAAACCCTAAACTTTTATATAATGTGATTGACATGTTGATGA
ATGTGTGTGTGAATTATAGGGATTATTCTTAGTTTGCAAGAGACCTTTAT
GATAAAAGAGAGATTTACAAGCAAAAACAAATAAATTTGCTAACATGTAT
ATTTCATATACCCGTGGGAGAATCACAGAGAATGAGGAATTCTCAAATAG
GTGGCTTTGAATCCTAGCTTATATAACATCTTCAAATGACAGTACATTTC
CTGAGAGGTGTCGGGCAGAGGAAAAAGACTTTAAGAATTGCAGGTGTAGT
GACTTGGAATAGAACAAAGAACAGGCAGAAGGGATGAGGGGAGGCAACCA
TGGGCTCATTTGAGTAGATGGGTTCTGGGCCAGTACAGTCCAGAACTGTA
ATGTGTGGTCACCTATTCTCCATGATAGGAGAATGTGAATTCATTTGTGT
TGGCTGGAGGAGAGTCTTTTGTCTATTTGAGTCCCGCTAATTGTAAGGTG
TGGTTATCCTATTCCCCTACGTAAGACAACGTGAATTTCTTGTTTTTAAA
GTTTGGCCTTCCCCCTCGTCCTAAATCCGTCTTCCTCCCCGCACACACAN
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_g22.b1 MSMg01no406_g22.b1 CHROMAT_FILE:
MSMg01no406_g22.b1 PHD_FILE: MSMg01no406_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:44 2005
         (486 letters)



>mm_chr1_183105207_183106094
          Length = 888

 Score =  874 bits (452), Expect = 0.0
 Identities = 476/484 (98%), Gaps = 2/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttaagtctctatcgagtttatcacaatgtcagagattttcacataatcctgt 64
           ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctcttaagcctttatcgagtttatcacaatgtcagagattttcacgtaatcctgt 264

                                                                       
Query: 65  caccaggttcttccaccataaacactagctttcttcacctttctaccacactcacttcat 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 caccaggttcttccaccataaaccctagctttcttcacctttctaccacactcacttcat 324

                                                                       
Query: 125 ggcaaatatacgaaacagatgcttacagcaaattggcacagtcaagtaccagtctagaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcaaatatacgaaacagatgcttacagcaaattggcacagtcaagtaccagtctagaga 384

                                                                       
Query: 185 gggagcggccagttaagacagacttggaaaccgaactcacctagctactatcaacacctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggagcggccagttaagacagacttggaaaccgaactcacctagctactatcaacacctt 444

                                                                       
Query: 245 tgcatagttgtaactccactctaacaggagttatgttctggtcatggccctcaccttcgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcatagttgtaactccactctaacaggagttatgttctggtcatggccctcaccttcgg 504

                                                                       
Query: 305 ggcacgctcttacctcccagtgtttt-aaatgtacttcagaagcagtgaacacgcggatc 363
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||
Sbjct: 505 ggcacgctcttacctcccagtgtttttaaatgtacttcagaagcagtgaacaggcgggtc 564

                                                                       
Query: 364 taggtgcagctggatacaaaactgccctgatgggtacagccctcagggagcatcatgcac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taggtgcagctggatacaaaactgccctgatgggtacagccctcagggagcatcatgcac 624

                                                                       
Query: 424 atgccacgtggtacactgtaaccacatctgtaaacagctgtggagt-ctgtgcccacatg 482
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 atgccacgtggtacactgtaaccacatctgtaaacagctgtggagttctgtgcccacatg 684

               
Query: 483 gtgt 486
           ||||
Sbjct: 685 gtgt 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 888
Length adjustment: 10
Effective length of query: 476
Effective length of database: 878
Effective search space:   417928
Effective search space used:   417928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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